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- 20:51, 9 December 2007 diff hist +305 N Stereo angle New page: == Overview == '''Stereo_angle''' sets the angle between the right and left frames for cross-eyed stereo. See stereo. == Syntax == <source lang="python"> set stereo_angle, float </source> == See ... current
- 20:49, 9 December 2007 diff hist +234 N Stereo Mode New page: == Overview == Sets the type of stereo mode for stereo. == Syntax == <source lang="python"> set stereo_mode, integer </source> == See Also == Stereo Stereo_angle [[Category:Settings|Setti...
- 20:46, 9 December 2007 diff hist +447 N Stereo New page: == Overview == The stereo option controls whether or not PyMOL displays the scene in stereo mode. Stereo mode is a convenient way to ''see'' 3D. There are also various 3D modes -- like "...
- 20:42, 9 December 2007 diff hist +14 N File:Stereo on.png Stereo example current
- 20:38, 9 December 2007 diff hist +5 Util.mroll →SEE ALSO current
- 20:37, 9 December 2007 diff hist +15 Util.mroll
- 20:36, 9 December 2007 diff hist +32 Load Model
- 20:35, 9 December 2007 diff hist 0 Get Color Indices
- 20:35, 9 December 2007 diff hist +41 Get Color Indices
- 19:27, 9 December 2007 diff hist -3 Main Page
- 19:08, 9 December 2007 diff hist +260 Talk:Main Page
- 04:06, 9 December 2007 diff hist +2 m Main Page
- 04:05, 9 December 2007 diff hist +1 Main Page
- 04:04, 9 December 2007 diff hist +13 m Main Page
- 04:01, 9 December 2007 diff hist +1,250 Main Page Major changes to the style of the home page. Used much more horizontal space. If it's b0rked on your browser, please comment.
- 17:47, 6 December 2007 diff hist +70 Expand To Surface →Example
- 17:42, 6 December 2007 diff hist +155 Expand To Surface →Example
- 17:29, 6 December 2007 diff hist +7 Expand To Surface
- 17:29, 6 December 2007 diff hist +1,811 N Expand To Surface New page: = Overview = This little script will color the surface of your protein the same color as the b-factors from the alpha carbons of each amino acid. This script is useful when you want to co...
- 14:49, 6 December 2007 diff hist +427 Color →Reassigning B-Factors and Coloring
- 14:45, 6 December 2007 diff hist +42 m Main Page →Links of Interest
- 14:11, 6 December 2007 diff hist +42 Surface color
- 14:10, 6 December 2007 diff hist +82 Category:Settings
- 14:09, 6 December 2007 diff hist -1 Surface color
- 14:09, 6 December 2007 diff hist +467 N Surface color New page: = Overview = '''surface_color''' controls the color of surfaces as drawn in PyMOL. <center> <gallery> Image:Surface color ex1.png|Usual surface coloring Image:Surface color ex2.png|Color ...
- 14:08, 6 December 2007 diff hist +28 N File:Surface color ex2.png Example of surface coloring. current
- 14:08, 6 December 2007 diff hist +28 N File:Surface color ex1.png Example of surface coloring. current
- 12:28, 6 December 2007 diff hist +100 Talk:Distance current
- 12:27, 6 December 2007 diff hist +19 Distance →DESCRIPTION
- 12:25, 6 December 2007 diff hist +455 Distance →EXAMPLES
- 12:22, 6 December 2007 diff hist +136 Distance →DESCRIPTION
- 12:21, 6 December 2007 diff hist +31 N File:Dist ex2.png Example distance with wildcard. current
- 12:19, 6 December 2007 diff hist +17 N File:Dist ex1.png Example distance. current
- 12:18, 6 December 2007 diff hist +25 Distance →USAGE
- 18:10, 30 November 2007 diff hist +954 Linux Install →PyMol
- 12:23, 29 November 2007 diff hist +565 N Sort New page: = DESCRIPTION = '''sort''' reorders atoms in the structure. It usually only necessary to run this routine after an "alter" command which has modified the names of atom properties. Withou...
- 12:14, 29 November 2007 diff hist -17 Alter
- 12:13, 29 November 2007 diff hist -4 Order
- 12:12, 29 November 2007 diff hist -12 Iterate State
- 12:11, 29 November 2007 diff hist -12 Alter State
- 21:43, 27 November 2007 diff hist -4 Map Set Border
- 21:39, 27 November 2007 diff hist -90 Cartoon Helix Settings →Result
- 00:45, 16 November 2007 diff hist +37 Png
- 00:44, 16 November 2007 diff hist +63 Zero residues →EXAMPLE
- 00:10, 15 November 2007 diff hist 0 Split states
- 00:10, 15 November 2007 diff hist 0 Fetch
- 00:09, 15 November 2007 diff hist 0 m System Cmd system moved to System
- 00:07, 15 November 2007 diff hist +35 Ray texture
- 00:06, 15 November 2007 diff hist +35 Ray Shadows current
- 23:23, 12 November 2007 diff hist +88 Main Page
- 13:38, 12 November 2007 diff hist -2 Cealign plugin →2007-04-14
- 13:38, 12 November 2007 diff hist -254 Cealign plugin →The Code
- 18:17, 7 November 2007 diff hist -12 Backward
- 18:17, 7 November 2007 diff hist -12 Forward
- 18:16, 7 November 2007 diff hist 0 Set Colour
- 18:16, 7 November 2007 diff hist -4 Set Colour
- 18:15, 7 November 2007 diff hist -8 Advanced Coloring
- 18:14, 7 November 2007 diff hist -4 Copy
- 18:13, 7 November 2007 diff hist -12 Center
- 18:13, 7 November 2007 diff hist -12 Zoom
- 18:11, 7 November 2007 diff hist -4 Displaying Biochemical Properties
- 15:29, 7 November 2007 diff hist -4 Set Key
- 15:28, 7 November 2007 diff hist -26 DynoPlot
- 12:01, 7 November 2007 diff hist -8 Count Frames
- 12:00, 7 November 2007 diff hist +38 Ribbon current
- 11:59, 7 November 2007 diff hist +27 Ribbon Width
- 23:05, 6 November 2007 diff hist -12 Orient
- 22:57, 6 November 2007 diff hist -8 Remove Picked
- 18:17, 6 November 2007 diff hist -12 Hide
- 18:17, 6 November 2007 diff hist +39 Resicolor
- 18:16, 6 November 2007 diff hist +82 Color Values
- 16:55, 6 November 2007 diff hist +43 PovRay
- 16:55, 6 November 2007 diff hist +48 Making Movies
- 16:55, 6 November 2007 diff hist +51 Software Codecs
- 16:54, 6 November 2007 diff hist +53 Surfaces and Voids
- 16:54, 6 November 2007 diff hist +38 O current
- 16:54, 6 November 2007 diff hist +42 SURFNET
- 13:06, 6 November 2007 diff hist -12 View
- 13:04, 6 November 2007 diff hist -24 Unbond
- 13:03, 6 November 2007 diff hist -20 Replace
- 13:03, 6 November 2007 diff hist -21 Bond
- 13:03, 6 November 2007 diff hist -20 Set Geometry
- 13:02, 6 November 2007 diff hist -4 Recolor
- 13:00, 6 November 2007 diff hist +61 Displaying Biochemical Properties →Surface Area
- 00:38, 6 November 2007 diff hist +48 Windows Install
- 00:37, 6 November 2007 diff hist +45 XFree86 Configuration current
- 00:37, 6 November 2007 diff hist +42 MAC Install
- 22:33, 5 November 2007 diff hist -2 Scripting FAQs
- 22:31, 5 November 2007 diff hist +29 EMovie
- 22:29, 5 November 2007 diff hist +30 S2S current
- 22:28, 5 November 2007 diff hist +36 Split states
- 22:26, 5 November 2007 diff hist +29 Fetch
- 19:45, 5 November 2007 diff hist +168 Category:Script Library
- 19:44, 5 November 2007 diff hist +14 Zero residues
- 19:43, 5 November 2007 diff hist +9 WriteSS
- 19:43, 5 November 2007 diff hist +50 Translate And Measure
- 19:42, 5 November 2007 diff hist +49 Nmr cnstr
- 19:42, 5 November 2007 diff hist +38 Ellipsoid
- 19:42, 5 November 2007 diff hist +48 PowerMate Dial OS X
- 19:42, 5 November 2007 diff hist +41 Plane Wizard
- 19:41, 5 November 2007 diff hist +35 Slerpy
- 19:41, 5 November 2007 diff hist +43 Helicity check
- 19:41, 5 November 2007 diff hist +43 Center of mass
- 19:41, 5 November 2007 diff hist +42 Iterate sses
- 19:38, 5 November 2007 diff hist -1 Ss
- 19:38, 5 November 2007 diff hist 0 Transform odb
- 19:37, 5 November 2007 diff hist +57 Ss
- 19:36, 5 November 2007 diff hist +106 Current events current
- 19:35, 5 November 2007 diff hist -172 Current events →Releases
- 19:33, 5 November 2007 diff hist +35 Motif
- 18:50, 5 November 2007 diff hist +78 Iterate →SEE ALSO
- 18:49, 5 November 2007 diff hist +246 Advanced Coloring →PyMol B-factor Coloring
- 11:36, 5 November 2007 diff hist +481 Sphere transparency
- 11:32, 5 November 2007 diff hist 0 N File:Sphere transparency ex3.png current
- 11:32, 5 November 2007 diff hist +31 N File:Sphere transparency ex1.png Example of sphere transparency. current
- 18:01, 3 November 2007 diff hist -25 Stereo Figures
- 18:01, 3 November 2007 diff hist +4,730 N Stereo Figures New page: =Making Stereo Figures= Try: <source lang="python"> ray angle=-3 png image1.png ray angle=3 png image2.png </source> This is superior to using the Cmd turn command because it also rotates the ligh...
- 17:57, 3 November 2007 diff hist +334 Making Movies
- 17:50, 3 November 2007 diff hist +52 Advanced Coloring
- 17:49, 3 November 2007 diff hist +5,603 N Advanced Coloring New page: =Coloring Molecules= ==Basic Coloring== Any molecule in PyMOL can be assigned a color using the small rightmost buttons in the object list (in the upper right part of the main GUI window....
- 17:33, 3 November 2007 diff hist +143 Sticks
- 17:29, 3 November 2007 diff hist +69 Examples of nucleic acid cartoons
- 17:27, 3 November 2007 diff hist +628 Iterate →Example
- 17:21, 3 November 2007 diff hist +15 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 17:20, 3 November 2007 diff hist +11 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 17:19, 3 November 2007 diff hist +23 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 17:16, 3 November 2007 diff hist +162 Talk:Displaying Biochemical Properties
- 17:15, 3 November 2007 diff hist +86 Displaying Biochemical Properties
- 17:13, 3 November 2007 diff hist +13 Main Page →Plugins/Scripts
- 17:11, 3 November 2007 diff hist +22 Mouse Controls
- 17:10, 3 November 2007 diff hist +31 Mouse Controls
- 17:09, 3 November 2007 diff hist +42 Ray
- 17:07, 3 November 2007 diff hist 0 Rms
- 17:07, 3 November 2007 diff hist 0 Get area
- 17:06, 3 November 2007 diff hist +9 Get area
- 17:06, 3 November 2007 diff hist +23 Get area
- 18:53, 2 November 2007 diff hist +275 Main Page →Wiki
- 18:51, 2 November 2007 diff hist 0 Displaying Biochemical Properties →See Also
- 18:50, 2 November 2007 diff hist +6 Displaying Biochemical Properties →See Also
- 18:48, 2 November 2007 diff hist +40 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 18:47, 2 November 2007 diff hist +9 Publication Quality Images →See Also
- 18:46, 2 November 2007 diff hist +50 m CMYK
- 18:42, 2 November 2007 diff hist -1 Set name →User Comments/Examples=
- 18:41, 2 November 2007 diff hist +33 Caver
- 18:40, 2 November 2007 diff hist +41 MAC Install
- 18:40, 2 November 2007 diff hist +35 Cartoon
- 18:40, 2 November 2007 diff hist +61 Displaying Biochemical Properties
- 18:40, 2 November 2007 diff hist +34 Nuccyl
- 18:36, 2 November 2007 diff hist +17 Property Selectors
- 18:36, 2 November 2007 diff hist +174 N Category:Selecting New page: = Overview = One of PyMOL's most powerful features is its ability to easily create robust selections. Here you will find the references needed to master selections in PyMOL. current
- 18:35, 2 November 2007 diff hist +8 Selection Macros
- 18:34, 2 November 2007 diff hist -14 Selection-expressions
- 18:34, 2 November 2007 diff hist +10 Selection Algebra
- 18:33, 2 November 2007 diff hist +4 Single-word Selectors
- 18:33, 2 November 2007 diff hist +19 Single-word Selectors
- 18:33, 2 November 2007 diff hist +45 Named Atom Selections current
- 18:31, 2 November 2007 diff hist +30 Select
- 17:29, 2 November 2007 diff hist +439 m Main Page →Wiki
- 17:24, 2 November 2007 diff hist +36 Internal Gui current
- 17:24, 2 November 2007 diff hist +39 Internal prompt current
- 17:24, 2 November 2007 diff hist +69 Label color
- 17:24, 2 November 2007 diff hist +73 Label font id
- 17:23, 2 November 2007 diff hist +85 Label outline color
- 17:23, 2 November 2007 diff hist +75 Label position
- 17:22, 2 November 2007 diff hist +80 Label shadow mode current
- 17:22, 2 November 2007 diff hist +67 Label size
- 17:22, 2 November 2007 diff hist +44 Sphere transparency
- 17:21, 2 November 2007 diff hist +36 Sphere color
- 17:21, 2 November 2007 diff hist +43 Spec reflect
- 17:21, 2 November 2007 diff hist +36 Line smooth
- 17:21, 2 November 2007 diff hist +35 Light count
- 17:21, 2 November 2007 diff hist +44 Min mesh spacing
- 17:21, 2 November 2007 diff hist +34 Mesh width current
- 17:20, 2 November 2007 diff hist +33 Mesh type current
- 17:20, 2 November 2007 diff hist +36 Mesh quality
- 17:20, 2 November 2007 diff hist +33 Mesh mode current
- 17:20, 2 November 2007 diff hist +37 Mesh lighting current
- 17:20, 2 November 2007 diff hist +34 m Mesh color
- 17:19, 2 November 2007 diff hist +34 Stick ball
- 17:19, 2 November 2007 diff hist +40 Stick ball ratio
- 17:19, 2 November 2007 diff hist +42 Stick transparency
- 17:19, 2 November 2007 diff hist +41 Virtual trackball
- 17:19, 2 November 2007 diff hist +31 Valence
- 17:19, 2 November 2007 diff hist +42 Two sided lighting current
- 17:18, 2 November 2007 diff hist +82 Transparency
- 17:17, 2 November 2007 diff hist +43 Cartoon rect length current
- 17:17, 2 November 2007 diff hist +42 Cartoon rect width current
- 17:16, 2 November 2007 diff hist +86 Cartoon ring mode current
- 17:16, 2 November 2007 diff hist +103 Cartoon ring transparency
- 17:16, 2 November 2007 diff hist +45 Cartoon round helices current
- 17:15, 2 November 2007 diff hist +40 Cartoon sampling
- 17:15, 2 November 2007 diff hist +49 Cartoon side chain helper
- 17:15, 2 November 2007 diff hist +44 Cartoon smooth loops current
- 17:15, 2 November 2007 diff hist +44 Cartoon transparency
- 17:14, 2 November 2007 diff hist +35 m Cavity cull
- 17:14, 2 November 2007 diff hist +34 Depth cue current
- 17:14, 2 November 2007 diff hist +34 Dot radius
- 17:14, 2 November 2007 diff hist +32 Seq view
- 17:14, 2 November 2007 diff hist +39 Selection width current
- 17:13, 2 November 2007 diff hist +33 Fog start current
- 17:13, 2 November 2007 diff hist +27 Fog
- 17:13, 2 November 2007 diff hist +37 Field Of View
- 17:13, 2 November 2007 diff hist +42 Seq view location
- 17:13, 2 November 2007 diff hist +33 Shininess current
- 17:10, 2 November 2007 diff hist +34 All states
- 17:10, 2 November 2007 diff hist +31 Ambient
- 17:10, 2 November 2007 diff hist +118 Antialias current
- 17:09, 2 November 2007 diff hist +42 Atom name wildcard
- 17:09, 2 November 2007 diff hist +35 Ray shadows
- 17:08, 2 November 2007 diff hist +34 Ray shadow current
- 17:08, 2 November 2007 diff hist +136 Ray orthoscopic
- 17:07, 2 November 2007 diff hist +154 Ray opaque background
- 17:07, 2 November 2007 diff hist +33 Auto zoom current
- 17:07, 2 November 2007 diff hist +38 Backface cull current
- 17:06, 2 November 2007 diff hist +31 Bg rgb
- 17:06, 2 November 2007 diff hist +37 Ray
- 17:05, 2 November 2007 diff hist +109 N Category:Publication Quality New page: = Overview = All things related to making media for high resolution print/presentation should be linked here. current
- 17:05, 2 November 2007 diff hist +60 Publication Quality Images
- 17:03, 2 November 2007 diff hist +40 Ray trace frames current
- 17:03, 2 November 2007 diff hist +177 N Ray trace fog New page: = Overview = Turn on or off the tracing of fog. Adding fog to the image assists in adding the feeling of depth. = See Also = depth_cue Ray trace fog current
- 17:02, 2 November 2007 diff hist +37 Cartoon color
- 17:02, 2 November 2007 diff hist +48 Cartoon highlight color
- 17:01, 2 November 2007 diff hist +45 Cartoon helix radius current
- 17:01, 2 November 2007 diff hist +44 Cartoon flat sheets
- 17:01, 2 November 2007 diff hist +43 Cartoon flat cycles current
- 17:01, 2 November 2007 diff hist +44 Cartoon fancy sheets current
- 17:00, 2 November 2007 diff hist +46 Cartoon Helix Settings
- 17:00, 2 November 2007 diff hist +46 Cartoon dumbbell width current
- 17:00, 2 November 2007 diff hist +47 Cartoon dumbbell radius current
- 17:00, 2 November 2007 diff hist +47 Cartoon dumbbell length current
- 16:59, 2 November 2007 diff hist +47 Cartoon discrete colors
- 16:59, 2 November 2007 diff hist +31 Reflect current
- 16:59, 2 November 2007 diff hist +37 Ribbon color
- 16:59, 2 November 2007 diff hist +39 Ribbon sampling
- 16:59, 2 November 2007 diff hist +37 Ribbon smooth
- 16:58, 2 November 2007 diff hist +34 N Ribbon width New page: Ribbon width
- 16:58, 2 November 2007 diff hist +42 Cartoon oval width
- 16:58, 2 November 2007 diff hist +44 Cartoon oval quality current
- 16:57, 2 November 2007 diff hist +43 Cartoon oval length
- 16:57, 2 November 2007 diff hist +107 Cartoon nucleic acid mode current
- 16:56, 2 November 2007 diff hist +64 N Category:Nucleic Acids New page: = Overview = All things related to nucleic acids should go here. current
- 16:56, 2 November 2007 diff hist +54 Cartoon nucleic acid color →See Also
- 16:55, 2 November 2007 diff hist +50 Cartoon nucleic acid color
- 16:46, 2 November 2007 diff hist +45 Seq view overlay
- 20:10, 1 November 2007 diff hist -10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 20:09, 1 November 2007 diff hist +6,928 N Modeling and Editing Structures New page: =Modeling in PyMOL= ==Saving with transformed coordinates== Here is a simple script that saves the molecule with coordinates from the current orientation. (invoke it with 'run save_trans...
- 20:09, 1 November 2007 diff hist -10 TOPTOC →PyMolWiki Top-Level Table Of Contents
- 20:07, 1 November 2007 diff hist +1,818 N Scripting FAQs New page: ==Script within a Structure== Q: Is there a way to embed a script within a PDB structure? A: Yes, there are two ways * Use the Read_Pdbstr command like, delete all cmd.read_pdbstr("...
- 14:23, 31 October 2007 diff hist +88 Main Page →Plugins/Scripts
- 16:58, 29 October 2007 diff hist +2 m Main Page