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News & Updates
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
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Origin

origin sets the center of rotation about a selection. If an object name is specified, it can be used to set the center of rotation for the object's TTT matrix.

USAGE

origin selection [, object [,position, [, state]]]
origin (selection)
origin position=[1.0,2.0,3.0]

PYMOL API

cmd.origin( string object-or-selection )

NOTES

  • state = 0 (default) use all coordinate states
  • state = -1 use only coordinates for the current state
  • state > 0 use coordinates for a specific state

SEE ALSO

Zoom, Orient, Reset


Example

This example puts the camera 'inside' a protein near the ligand and turns the camera 360 degrees about that location.

load $TUT/1hpv.pdb

set field_of_view, 45

zoom organic
orient organic
show stick, polymer
show surface
set surface_color, white
set transparency, 0.5
clip slab, 30
set line_width, 5

cmd.move("z",-cmd.get_view()[11])

python
def spin():
   from pymol  [[Origin|..]]
A Random PyMOL-generated Cover. See Covers.