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Welcome to the PyMOL Wiki!
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Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Edit Keys

These are defaults, which can be redefined.  Note that while
entering text on the command line, some of these control keys take on
text editing functions instead (CTRL - A, E, and K, and DELETE), so
you should clear the command line before trying to edit atoms.


  CTRL-C    Replace picked atom with carbon   (C)
  CTRL-N    Replace picked atom with nitrogen (N)
  CTRL-O    Replace picked atom with oxygen   (O)
  CTRL-S    Replace picked atom with sulpher  (S)
  CTRL-G    Replace picked atom with hydrogen (H)
  CTRL-F    Replace picked atom with fluorene (F)
  CTRL-L    Replace picked atom with chlorine (Cl)
  CTRL-B    Replace picked atom with bromine  (Br)
  CTRL-I    Replace picked atom with iodine   (I)


  CTRL-J    Set charge on picked atom to -1
  CTRL-K    Set charge on picked atom to +1
  CTRL-D    Remove atom or bond (DELETE works too).
  CTRL-Y    Add a hydrogen to the current atom
  CTRL-R    Adjust hydrogens on atom/bond to match  ..→
A Random PyMOL-generated Cover. See Covers.