Revision as of 09:13, 30 April 2009

Script Categories
User Interface	Objects and Selections	System (OS/Filesystem/Web/etc)
ObjectByArrows PowerMate Dial OS X Mouse modes Key Wait Grepset Apropos Stereo ray PDB Web Services Script Stereo Figures Movit Spectrumbar Save2traj VisLoad Aa codes Set toggle Movie fade Save settings Dynamic mesh ObjectFocus Make Figures Inertia tensor ImmersiveViz RUCAP UM-5 Format bonds Get colors Movie color fade Quickdisplays Distancetoatom Pytms Frame slider	ConnectedCloud Zero residues List Selection List Colors List Secondary Structures Selection Exists Color Objects Get Coordinates I Get Coordinates II Grepsel Findseq ToGroup Save sep FindSurfaceResidues AlphaToAll Expand To Surface Removealt GetNamesInSel FindObjectsNearby CollapseSel SelInside Split selection Split Object Along Axis Split Movement SaveGroup SelectClipped Rotkit Get raw distances Find buried waters Count molecules in selection DistancesRH Cluster Count ListSelection2 Pairwise distances ShowLigandWaters Flatten obj Annotate v Color cbcobj FindSurfaceCharge	FilterByMol LoadDir Process All Files In Directory PythonTerminal Pdbsurvey Read PDB-String Pml2py Tiff2ccp4 Monitor file continuously XML-RPC server FetchLocal Find symbol
Structural Biology	Third Party	Biochemical Scripts
Rotamer Toggle CreateSecondaryStructure WriteSS Iterate sses Helicity check Measure Distance Translate And Measure Motif Nmr cnstr FindSurfaceResidues InterfaceResidues ColorByRMSD Centroid Average b Ss Ccp4 ncont AutoMultiFit Consistent View/ Map Inspect BiologicalUnit BbPlane AngleBetweenHelices AAindex Sidechaincenters Displacementmap HighlightAlignedSS BiologicalUnit/Quat Color By Mutations Ccp4 contact Ccp4 pisa Propka DynoPlot Cart to frac Colorbydisplacement Resicolor plugin Color by conservation Cyspka Elbow angle Transformations DistancesRH Contact Surface Pairwise distances ShowLigandWaters Bondpack Colorblindfriendly Load new B-factors RotationAxis Draw Protein Dimensions Dssr block PDB plugin RmsdByResidue Angle between domains Mcsalign Msms surface Dssp LigAlign Xfit Intra xfit Sst Load aln Show contacts FindSurfaceCharge	Rasmolify Wfmesh Transform odb PovRay Ccp4 ncont Ccp4 contact Ccp4 pisa Tiff2ccp4 Pymol2glmol Save Mopac PoseView RUCAP UM-5	Show aromatics Show hydrophobics Show charged Show hydrophilic Pucker Resicolor CreateAtom Color h FindSurfaceResidues Average b AAindex Polarpairs Propka Forster distance calculator Cyspka DistancesRH ListSelection2 Pairwise distances ShowLigandWaters Quickdisplays Distancetoatom Load new B-factors Pytms Show contacts Color cbcobj FindSurfaceCharge
Math/Geometry/CGO
Perp maker Symmetry Axis CGO Text Plane Wizard Bounding Box Ellipsoid TransformSelectionByCameraView Modevectors Center of mass DrawBoundingBox Slerpy CgoCircle SuperSym Supercell BiologicalUnit BbPlane BiologicalUnit/Quat Radius of gyration Cart to frac Mark center Dump2CGO Axes Contact Surface Cgo arrow Cubes Distancetoatom Cgo grid RotationAxis Draw Protein Dimensions

Notes

Feel free to add scripts
Feel free to add new categories for your scripts and to the table
See this page's discussion page for script requests

Subcategories

This category has the following 7 subcategories, out of 7 total.

S

T

ThirdParty Scripts

U

UI Scripts

Pages in category "Script Library"

The following 197 pages are in this category, out of 197 total.

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Jump

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Uniprot features

V

VisLoad

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Zero residues

@@ Line 1: / Line 1: @@
-The PyMOLWiki script library houses many useful scripts.  Here you will find premade scripts that will extend the power of PyMOL.
+{| style="valign: top; text-align: left; width=auto; background: #3fc; padding: 3em;" align="center"
+|+ style="font-size: 2.5em; font-weight: bold; padding: 0.5em; text-decoration: underline" |Script Categories
-The scripts are now categorized based on their function.  Someone may have added a script but not listed it on this page, therefore please see the autogenerated list of scripts at the bottom of this page.
+! style="font-size: 1.25em; width: 33%" | [[:Category:UI_Scripts|User Interface]]
+! style="font-size: 1.25em; width: 33%" | [[:Category:ObjSel_Scripts|Objects and Selections]]
-Please post any script requests to this page's discussion page.  Who knows, someone might have already written it or would be willing to write it.
+! style="font-size: 1.25em; width: 33%" |  [[:Category:System_Scripts|System (OS/Filesystem/Web/etc)]]
+|- valign=top
-== [[:Category:UI_Scripts|User Interface]] ==
+|<DPL>
-<DPL>
 category=UI_Scripts
 redirects=include
 mode=unordered
 </DPL>
+||
-== [[:Category:ObjSel_Scripts|Objects and Selections]] ==
 <DPL>
 category=ObjSel_Scripts
@@ Line 18: / Line 16: @@
 mode=unordered
 </DPL>
+||
-== [[:Category:System_Scripts|System (OS/Filesystem/Web/etc)]] ==
 <DPL>
 category=System_Scripts
@@ Line 25: / Line 22: @@
 mode=unordered
 </DPL>
+|-
-== [[:Category:Structural_Biology_Scripts|Structural Biology]] ==
+! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:Structural_Biology_Scripts|Structural Biology]]
-<DPL>
+! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:ThirdParty_Scripts|Third Party]]
-category=System_Scripts
+! style="font-size: 1.25em; padding-top: 3.5em;" | [[:Category:Biochemical_Scripts|Biochemical Scripts]]
+|- valign=top
+|<DPL>
+category=Structural_Biology_Scripts
 redirects=include
 mode=unordered
 </DPL>
+||
-== [[:Category:ThirdParty_Scripts|Third Party]] ==
 <DPL>
 category=ThirdParty_Scripts
@@ Line 39: / Line 38: @@
 mode=unordered
 </DPL>
+||
-== [[:Category:Biochemical_Scripts|Biochemical Scripts]] ==
 <DPL>
 category=Biochemical_Scripts
@@ Line 46: / Line 44: @@
 mode=unordered
 </DPL>
+|-
-== [[:Category:Math_Scripts|Math/Geometry/CGO]] ==
+! style="font-size: 1.25em;  padding-top: 3.5em;" | [[:Category:Math_Scripts|Math/Geometry/CGO]]
-<DPL>
+|- valign=top
+|<DPL>
 category=Math_Scripts
 redirects=include
 mode=unordered
 </DPL>
+|}
+= Notes =
+* Feel free to add scripts
+* Feel free to add new categories for your scripts and to the table
+* See this page's discussion page for script requests
 [[Category:Scripting|Script Library]]

Category:Script Library: Difference between revisions

Revision as of 09:13, 30 April 2009

Notes

Subcategories

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Pages in category "Script Library"

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Category:Script Library: Difference between revisions

Revision as of 09:13, 30 April 2009

Notes

Subcategories

B

M

O

S

T

U

Pages in category "Script Library"

A

B

C

D

E

F

G

H

I

J

K

L

M

O

P

Q

R

S

T

U

V

W

X

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