Show bumps

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Type Python Module
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.


This is a script to visualize VDW clashes, just like the mutagenesis wizard does.

Posted on pymol-users mailing list.


show_bumps [ selection [, name ]]

Related Settings

  • sculpt_vdw_vis_max (default: 0.3)
  • sculpt_vdw_vis_mid (default: 0.1)
  • sculpt_vdw_vis_min (default: -0.1)