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- 17:41, 1 April 2009 diff hist +58 m Pucker Just made small edits to make the text more clear; also added some "source" stmts
- 17:38, 1 April 2009 diff hist +149 Main Page
- 17:37, 1 April 2009 diff hist +36 Pucker
- 19:53, 31 March 2009 diff hist +122 m Talk:Huge surfaces current
- 16:22, 23 March 2009 diff hist +653 Load →NOTES
- 16:22, 23 March 2009 diff hist -321 Load →DESCRIPTION
- 16:09, 23 March 2009 diff hist +320 Load
- 14:39, 23 March 2009 diff hist -1 GetNamesInSel
- 14:39, 23 March 2009 diff hist -1 GetNamesInSel
- 14:38, 23 March 2009 diff hist +435 GetNamesInSel
- 14:36, 23 March 2009 diff hist +116 GetNamesInSel
- 11:54, 21 March 2009 diff hist +6 Label
- 09:55, 20 March 2009 diff hist +263 Main Page
- 09:52, 20 March 2009 diff hist +634 N CalcArea New page: =Overview= This code will calculate the area of a given selection. If you have a bunch of disparate selections, or one selection made up of various objects then you can use this to find t...
- 09:48, 20 March 2009 diff hist +747 N GetNamesInSel New page: = Overview = This script returns the list of object names that exist in any given selection. For example, if you have 100 objects loaded (viz. ligand poses from small molecule docking) an...
- 12:33, 19 March 2009 diff hist +96 Align →NOTE
- 18:00, 18 March 2009 diff hist +219 Linux Install
- 12:00, 17 March 2009 diff hist +68 Surface →Calculating a partial surface
- 11:59, 17 March 2009 diff hist +85 Get area
- 11:57, 17 March 2009 diff hist +34 ConnectedCloud
- 09:58, 15 March 2009 diff hist +41 Advanced Scripting
- 09:29, 11 March 2009 diff hist +125 Commands
- 09:28, 11 March 2009 diff hist +20 Pymolrc
- 16:23, 2 March 2009 diff hist +124 FindObjectsNearby
- 22:21, 28 February 2009 diff hist +324 As
- 22:17, 28 February 2009 diff hist +43 Nonstandard Amino Acids current
- 22:15, 28 February 2009 diff hist +50 N Category:Biochemical Properties New page: Information about Biochemical Properties in PyMOL. current
- 18:01, 27 February 2009 diff hist -3 Main Page
- 17:42, 27 February 2009 diff hist +175 Category:Script Library
- 17:41, 27 February 2009 diff hist +44 ConnectedCloud
- 17:41, 27 February 2009 diff hist +115 Main Page
- 17:40, 27 February 2009 diff hist +3,845 N ConnectedCloud New page: = Overview = ConnectedCloud grows a cloud of objects that are "connected." Two objects are "connected" if they are within the user-defined cutoff, radius. It starts with a selection,...
- 17:30, 27 February 2009 diff hist +14 N File:ConnectedCloud2.png objects found. current
- 17:29, 27 February 2009 diff hist +24 N File:ConnectedCloud.png Connected cloud to find. current
- 16:55, 26 February 2009 diff hist +3 Main Page
- 16:51, 24 February 2009 diff hist +126 Main Page
- 15:44, 24 February 2009 diff hist +270 N Category:Launching New page: = Overview = PyMOL can be launched in various ways. You can start it normally, from an icon or the commandline. You can also run it in headless mode from scripts and from within a separa... current
- 15:42, 24 February 2009 diff hist +24 Command Line Options
- 09:44, 24 February 2009 diff hist +175 Main Page
- 09:42, 24 February 2009 diff hist +3,302 N MakeVinaCommand New page: = Overview = [http://vina.scripps.edu/ Vina] is a new, very fast, molecular docking program, written by Oleg Trott. In order to run Vina, you should have [http://mgltools.scripps.edu/down...
- 09:16, 24 February 2009 diff hist -48 3DNA →Invoking
- 13:16, 20 February 2009 diff hist +139 Main Page
- 13:14, 20 February 2009 diff hist +33 DrawBoundingBox
- 13:13, 20 February 2009 diff hist +5,532 N DrawBoundingBox New page: = OVERVIEW = Draws the minumum bounding box around your selection. <gallery> Image:DrawMinBB.png|Example min BB </gallery> = Example = <source lang="python"> run ~/drawMinBoundingBox.py ...
- 13:11, 20 February 2009 diff hist +17 N File:DrawMinBoundBox.tar.bz2 Draw min BB code. current
- 13:09, 20 February 2009 diff hist +20 N File:DrawMinBB.png Example of the minBB current
- 12:07, 6 February 2009 diff hist +11 Surface solvent
- 13:42, 29 January 2009 diff hist +140 Main Page
- 13:40, 29 January 2009 diff hist +2,084 N FindObjectsNearby New page: == Overview == This script returns the names of all objects (in state 1) that are within a certain cutoff distance from your provided target. For example, if you load an MD trajectory and...
- 16:34, 28 January 2009 diff hist +13 As
- 16:34, 28 January 2009 diff hist +1,407 N Show as New page: == DESCRIPTION == (History: Python 2.6 came out with the keyword as which is also a PyMOL keyword. So, we had to change the PyMOL-named keyword to show_as.) show_as turns on ...
- 11:25, 27 January 2009 diff hist +271 Get Title
- 10:01, 27 January 2009 diff hist +117 Property Selectors →General
- 10:00, 27 January 2009 diff hist +63 Selection Macros →General
- 12:30, 23 January 2009 diff hist +159 Cealign plugin →Discussion
- 12:07, 22 January 2009 diff hist +26 m Cealign plugin →Fit vs. optAlign
- 12:05, 22 January 2009 diff hist +2,324 Cealign plugin →Comparison to PyMol
- 09:52, 19 January 2009 diff hist -76 Split states
- 09:52, 19 January 2009 diff hist +556 Split states →Using
- 09:25, 19 January 2009 diff hist +296 Windows Install
- 09:23, 19 January 2009 diff hist +548 Ray →Performance
- 09:21, 19 January 2009 diff hist -2 m Talk:Ray
- 09:20, 19 January 2009 diff hist +488 Talk:Ray New section: Cool idea
- 09:16, 19 January 2009 diff hist +28 Viewport
- 09:14, 19 January 2009 diff hist +116 N Category:Concepts New page: = Introduction = PyMOL has a few basic concepts that are worth knowing. Those currently documented are listed here. current
- 09:13, 19 January 2009 diff hist +68 N Category:States New page: PyMOLWiki pages related to the concept of using States in PyMOL. current
- 09:12, 19 January 2009 diff hist +20 Defer builds mode current
- 09:12, 19 January 2009 diff hist +20 Pseudoatom
- 09:12, 19 January 2009 diff hist +20 Script Tutorial
- 09:12, 19 January 2009 diff hist +20 Modeling and Editing Structures
- 09:12, 19 January 2009 diff hist +20 Practical Pymol for Beginners
- 09:11, 19 January 2009 diff hist +20 Ribbon color
- 09:11, 19 January 2009 diff hist +20 Split states
- 09:11, 19 January 2009 diff hist +20 Set Dihedral
- 09:11, 19 January 2009 diff hist +20 Editing atoms
- 09:10, 19 January 2009 diff hist +20 Isosurface
- 09:10, 19 January 2009 diff hist +20 Isomesh
- 09:10, 19 January 2009 diff hist +20 Isolevel
- 09:10, 19 January 2009 diff hist +20 Isodot
- 09:10, 19 January 2009 diff hist +20 Load traj
- 09:09, 19 January 2009 diff hist +20 Load Model
- 09:09, 19 January 2009 diff hist +20 Mset
- 09:09, 19 January 2009 diff hist +20 Map double
- 09:09, 19 January 2009 diff hist +20 Origin
- 09:09, 19 January 2009 diff hist +20 Orient
- 09:09, 19 January 2009 diff hist +20 Rotate
- 09:09, 19 January 2009 diff hist +20 Read Pdbstr
- 09:09, 19 January 2009 diff hist +20 Read Molstr
- 09:08, 19 January 2009 diff hist +20 Set Title
- 09:08, 19 January 2009 diff hist +20 Set name
- 09:08, 19 January 2009 diff hist +20 Save
- 09:08, 19 January 2009 diff hist +20 Scene
- 09:08, 19 January 2009 diff hist +20 Translate
- 09:08, 19 January 2009 diff hist +20 Unset
- 09:08, 19 January 2009 diff hist +20 Get Title
- 09:08, 19 January 2009 diff hist +20 Get Pdbstr
- 09:08, 19 January 2009 diff hist +20 Get Distance
- 09:08, 19 January 2009 diff hist +20 Get Dihedral
- 09:07, 19 January 2009 diff hist +20 Get Angle
- 09:07, 19 January 2009 diff hist +20 Clip