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- 12:42, 22 September 2011 diff hist +1,208 Get area
- 23:53, 17 September 2011 diff hist +129 Spectrum
- 23:52, 17 September 2011 diff hist +21 N File:Spectrum ex2.png example by atom count current
- 23:49, 17 September 2011 diff hist +60 N File:Spectrum example.png Shows coloring by modified b-factor as distance from origin. current
- 23:48, 17 September 2011 diff hist +2,898 N Spectrum Created page with "= Overview = Spectrum colors atoms with a spectrum of colors based on an atomic property. = Usage = <source lang="python"> spectrum [expression [, palette [, selection [..."
- 23:39, 17 September 2011 diff hist +119 Ramp New →Surface Colored by Distance from a Point
- 12:05, 16 September 2011 diff hist +89 Tiff2ccp4
- 12:04, 16 September 2011 diff hist +299 Tiff2ccp4 →Overview
- 12:02, 16 September 2011 diff hist +16,095 N Tiff2ccp4 Created page with "= Overview = This script will convert tiff stacks to CCP4 maps for reading in PyMOL. If someone knows how to determine the file's dimensions from the file itself (not the image..."
- 13:07, 14 September 2011 diff hist +2,335 N Movie fade Created page with "= Overview = This script will help fade in and out settings in a movie. Just specify the setting, it's initial value at an initial frame and it's ending value and frame. For exam..."
- 13:16, 6 September 2011 diff hist +286 Category talk:Script Library →Requests
- 17:12, 31 August 2011 diff hist +490 N Ray texture settings Created page with "= Overview = ray_texture_settings controls the wobble and wiggle settings for texturing. Playing with these settings can produce interesting effects. The values take on diff..." current
- 17:10, 31 August 2011 diff hist +22 N File:Wood.png Wooden like rendering. current
- 16:51, 31 August 2011 diff hist +42 Ray texture
- 02:29, 26 August 2011 diff hist +481 Matrix Copy →Example
- 12:45, 25 August 2011 diff hist -12 m BbPlane →The Source
- 16:04, 23 August 2011 diff hist +1,722 N Split object Created page with "split_object takes a multi-molecular object and converts it into a multi-state object. Similar to split_states but for molecules instead of states and the result of this ..."
- 09:34, 23 August 2011 diff hist +166 Surface mode →Syntax
- 13:15, 18 August 2011 diff hist +65 Get raw alignment →EXAMPLE
- 15:44, 17 August 2011 diff hist +4,411 N Focus alignment Created page with "= Overview = When aligning binding sites, it's useful to focus on a particular subset of atoms. However, alignments can go haywire when choosing non-contiguous subsets of atoms...." current
- 15:43, 17 August 2011 diff hist +23 N File:Fa2.png focused alignment after current
- 15:42, 17 August 2011 diff hist +24 N File:Fa.png focused alignment before current
- 13:36, 16 August 2011 diff hist +64 N Talk:Propka Created page with "Once this is done, please feel free to let the pymol-users know." current
- 09:05, 16 August 2011 diff hist +90 Ideas →More Ideas (Please add your own!)
- 09:13, 15 August 2011 diff hist +24 Label →Details
- 09:12, 15 August 2011 diff hist +104 Label →Settings
- 12:17, 2 August 2011 diff hist +102 Talk:Alter current
- 12:16, 2 August 2011 diff hist -800 Alter →Coloring a Viral Capsid by Distance from Core
- 12:16, 2 August 2011 diff hist +800 Ramp New →Surface Colored by Distance from a Point
- 10:30, 1 August 2011 diff hist +1 Alter →Coloring a Viral Capsid by Distance from Core
- 14:10, 29 July 2011 diff hist 0 m Alter →Coloring a Viral Capsid by Distance from Core
- 12:28, 29 July 2011 diff hist +799 Alter →Change the b values of all atoms to the distance of the atoms to a reference point
- 12:24, 29 July 2011 diff hist +38 N File:Capsid by dist.png capsid colored by distance from center current
- 12:20, 29 July 2011 diff hist +23 Alter →EXAMPLES
- 15:07, 28 July 2011 diff hist +1 Ramp New
- 15:06, 28 July 2011 diff hist +803 Ramp New →Elaborate examples
- 15:04, 28 July 2011 diff hist +28 N File:Measure.png Surface colored by distance. current
- 13:11, 18 July 2011 diff hist +20 Category:FAQ →Others current
- 13:08, 18 July 2011 diff hist 0 Label →Settings
- 12:50, 18 July 2011 diff hist +424 N Transparency mode Created page with "Transparency_mode controls how PyMOL handles transparent objects = Example Images = <gallery widths=300 heights=200> Image:Unilayer.png|Unilayer transparency Image:Multilaye..."
- 12:48, 18 July 2011 diff hist 0 N File:Multilayer.png current
- 12:48, 18 July 2011 diff hist 0 File:Unilayer.png uploaded a new version of "File:Unilayer.png" current
- 12:46, 18 July 2011 diff hist +24 N File:Unilayer.png Unilayer transparency on
- 10:05, 8 July 2011 diff hist +95 Stereo 3D Display Options →Zalman
- 09:57, 6 July 2011 diff hist +771 Cycle Valence →NOTES current
- 18:26, 5 July 2011 diff hist -14 Cycle Valence
- 16:37, 5 July 2011 diff hist +13 Cycle valence current
- 14:43, 5 July 2011 diff hist +109 Ramp New →Usage
- 18:05, 4 July 2011 diff hist 0 Smooth →NOTES
- 13:56, 22 June 2011 diff hist 0 Cealign plugin →Results
- 18:55, 17 June 2011 diff hist -163 Covers
- 18:54, 17 June 2011 diff hist +163 Covers
- 20:27, 15 June 2011 diff hist +112 FocalBlur →Examples
- 20:24, 15 June 2011 diff hist 0 N File:Focal blur ex6.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode3.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode2.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode1.png current
- 21:23, 8 June 2011 diff hist +129 Covers
- 21:21, 8 June 2011 diff hist 0 N File:MolecularCell011.jpg current
- 08:59, 7 June 2011 diff hist -35 Main Page
- 08:58, 7 June 2011 diff hist +93 Main Page
- 13:19, 27 May 2011 diff hist +357 N Chromadepth Created page with "Chromadepth is a type of stereo 3D that uses color to encode depth. Reds are closer to the viewer, blue are farther away. This has been implemented in PyMOL and will be stereo_..."
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d5.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d4.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d3.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d2.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d.png current
- 09:47, 24 May 2011 diff hist +25 Cache current
- 14:27, 21 May 2011 diff hist +58 Covers
- 14:25, 21 May 2011 diff hist 0 N File:Cen.jpg current
- 21:54, 19 May 2011 diff hist +47 Annotation wizard
- 21:53, 19 May 2011 diff hist 0 N File:Ann.png current
- 21:53, 19 May 2011 diff hist +3,586 N Annotation wizard Created page with "Here's an example of using the annotation wizard: <source lang="python"> import pymol ..."
- 13:22, 17 May 2011 diff hist +447 N Pdb reformat names mode Created page with "pdb_reformat_names_mode sets atom naming for PDB files as it reads them. = Usage = <source lang="python"> # example usage, set to amber compliant set pdb_reformat_names_mo..." current
- 14:35, 6 May 2011 diff hist +243 PLoS →Overview, general notes
- 23:48, 27 April 2011 diff hist +46 Gallery
- 23:44, 27 April 2011 diff hist +43 N File:Depthmol.mpeg depth enhanced ambient occlusion-like movie
- 13:10, 27 April 2011 diff hist 0 Cealign plugin
- 12:39, 25 April 2011 diff hist +252 N Ribbon transparency Created page with "In version v1.4.1 of PyMOL, we can now render transparent ribbons. This setting controls the level of transparency for the ribbons. <gallery widths=400 heights=300> Image:Tp_ri..." current
- 12:38, 25 April 2011 diff hist +19 N File:Tp ribbon.png transparent ribbons current
- 17:43, 22 April 2011 diff hist +301 N State counter mode Created page with "This setting controls whether or not the object-specific state counter is shown and how it's shown: Values: '''0, off''' :: off '''1, on''' :: on, fractional mode (eg. X/Y, mea..." current
- 15:31, 22 April 2011 diff hist +114 N Selection visible only Created page with "If this setting is turned on, then PyMOL will only show indicator dots for visible objects. Category:Settings" current
- 15:30, 22 April 2011 diff hist +270 N Selection round points Created page with "This setting controls the shape of PyMOL's indicator dots. If set, it'll round the edges, if not rectangular. <gallery widths=400px heights=280> File:Selection_overaly1.png|Rou..." current
- 15:28, 22 April 2011 diff hist +273 N Selection overlay Created page with "selection_overlay changes how PyMOL draws the selection indicator dots. If enabled, the indicators are drawn above the atoms, else underneath. <gallery> Image:Selection ove..." current
- 15:25, 22 April 2011 diff hist +15 N File:Selection roundpts1.png round points on current
- 15:25, 22 April 2011 diff hist +34 N File:Selection overaly1.png selection indicators overlay atoms current
- 15:24, 22 April 2011 diff hist +30 N File:Selection overaly0.png selection overlays atoms (off) current
- 12:40, 22 April 2011 diff hist +214 N Max ups Created page with "Setting max_ups (updates per second) sets how quickly PyMOL redraws itself. Set to 0, PyMOL draws as quickly as possible; set to 10, PyMOL would redraw the screen 10 times a..." current
- 12:30, 22 April 2011 diff hist +237 N Static singletons Created page with "If set, static_singletons will always show single-state objects in the viewer, regardless of 'scene' or 'global' state. Turning this off, will hide single-state objects, whe..." current
- 12:35, 19 April 2011 diff hist +252 Nm Hide underscore names Created page with "PyMOL uses names prefixed with "_" (underscore) as special internal objects and selections. Setting "hide_underscore_names" in PyMOL will hide these objects or selections from t..." current
- 10:26, 19 April 2011 diff hist +1,371 N SelectClipped Created page with "This script selects those atoms that are == The Code == <source lang="python"> from pymol import cmd def clipped_by(at,v): x,y,z = at.coord nz = v[2]*(x-v[12])+v[5]*(y-v[1..."
- 14:23, 18 April 2011 diff hist -5 m Fetching scripts
- 15:15, 13 April 2011 diff hist -2 Volume
- 15:14, 13 April 2011 diff hist -377 Volume
- 15:13, 13 April 2011 diff hist +569 Volume →Examples
- 12:50, 13 April 2011 diff hist +245 N Button mode name Created page with "Button_mode_name is the textual description of the current state of the mouse mode matrix. Current options are: * 3-Button Maestro * 3-Button Viewing * 3-Button Edi..." current
- 20:15, 12 April 2011 diff hist +154 N Bg rgb bottom Created page with "This value, when bg_gradient is set, provides the bottom color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_top" current
- 20:14, 12 April 2011 diff hist +154 N Bg rgb top Created page with "This value, when bg_gradient is set, provides the top color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_bottom" current
- 16:00, 12 April 2011 diff hist -8 Connect mode