Connect mode

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Overview

Sets how bonds are made when loading a file.

Values:

  • 0 = distance-based (excluding HETATM to HETATM) and CONECT records
  • 1 = CONECT records
  • 2 = distance-based, ignores CONECT records
  • 3 = distance-based (including HETATM to HETATM) and CONECT records
  • 4 = for loading mmCIF: use the chemical components dictionary to look up bonds (in PyMOL 1.7.4, components.cif needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service)

Syntax

# ignore CONECT records
set connect_mode, 2

See Also

Load, Connect_cutoff, Connect_bonded