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- 18:55, 17 June 2011 diff hist -163 Covers
- 18:54, 17 June 2011 diff hist +163 Covers
- 20:27, 15 June 2011 diff hist +112 FocalBlur →Examples
- 20:24, 15 June 2011 diff hist 0 N File:Focal blur ex6.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode3.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode2.png current
- 20:23, 15 June 2011 diff hist 0 N File:Focal blur ex ap3 mode1.png current
- 21:23, 8 June 2011 diff hist +129 Covers
- 21:21, 8 June 2011 diff hist 0 N File:MolecularCell011.jpg current
- 08:59, 7 June 2011 diff hist -35 Main Page
- 08:58, 7 June 2011 diff hist +93 Main Page
- 13:19, 27 May 2011 diff hist +357 N Chromadepth Created page with "Chromadepth is a type of stereo 3D that uses color to encode depth. Reds are closer to the viewer, blue are farther away. This has been implemented in PyMOL and will be stereo_..."
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d5.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d4.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d3.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d2.png current
- 13:16, 27 May 2011 diff hist 0 N File:Chroma 3d.png current
- 09:47, 24 May 2011 diff hist +25 Cache current
- 14:27, 21 May 2011 diff hist +58 Covers
- 14:25, 21 May 2011 diff hist 0 N File:Cen.jpg current
- 21:54, 19 May 2011 diff hist +47 Annotation wizard
- 21:53, 19 May 2011 diff hist 0 N File:Ann.png current
- 21:53, 19 May 2011 diff hist +3,586 N Annotation wizard Created page with "Here's an example of using the annotation wizard: <source lang="python"> import pymol ..."
- 13:22, 17 May 2011 diff hist +447 N Pdb reformat names mode Created page with "pdb_reformat_names_mode sets atom naming for PDB files as it reads them. = Usage = <source lang="python"> # example usage, set to amber compliant set pdb_reformat_names_mo..." current
- 14:35, 6 May 2011 diff hist +243 PLoS →Overview, general notes
- 23:48, 27 April 2011 diff hist +46 Gallery
- 23:44, 27 April 2011 diff hist +43 N File:Depthmol.mpeg depth enhanced ambient occlusion-like movie
- 13:10, 27 April 2011 diff hist 0 Cealign plugin
- 12:39, 25 April 2011 diff hist +252 N Ribbon transparency Created page with "In version v1.4.1 of PyMOL, we can now render transparent ribbons. This setting controls the level of transparency for the ribbons. <gallery widths=400 heights=300> Image:Tp_ri..." current
- 12:38, 25 April 2011 diff hist +19 N File:Tp ribbon.png transparent ribbons current
- 17:43, 22 April 2011 diff hist +301 N State counter mode Created page with "This setting controls whether or not the object-specific state counter is shown and how it's shown: Values: '''0, off''' :: off '''1, on''' :: on, fractional mode (eg. X/Y, mea..." current
- 15:31, 22 April 2011 diff hist +114 N Selection visible only Created page with "If this setting is turned on, then PyMOL will only show indicator dots for visible objects. Category:Settings" current
- 15:30, 22 April 2011 diff hist +270 N Selection round points Created page with "This setting controls the shape of PyMOL's indicator dots. If set, it'll round the edges, if not rectangular. <gallery widths=400px heights=280> File:Selection_overaly1.png|Rou..." current
- 15:28, 22 April 2011 diff hist +273 N Selection overlay Created page with "selection_overlay changes how PyMOL draws the selection indicator dots. If enabled, the indicators are drawn above the atoms, else underneath. <gallery> Image:Selection ove..." current
- 15:25, 22 April 2011 diff hist +15 N File:Selection roundpts1.png round points on current
- 15:25, 22 April 2011 diff hist +34 N File:Selection overaly1.png selection indicators overlay atoms current
- 15:24, 22 April 2011 diff hist +30 N File:Selection overaly0.png selection overlays atoms (off) current
- 12:40, 22 April 2011 diff hist +214 N Max ups Created page with "Setting max_ups (updates per second) sets how quickly PyMOL redraws itself. Set to 0, PyMOL draws as quickly as possible; set to 10, PyMOL would redraw the screen 10 times a..." current
- 12:30, 22 April 2011 diff hist +237 N Static singletons Created page with "If set, static_singletons will always show single-state objects in the viewer, regardless of 'scene' or 'global' state. Turning this off, will hide single-state objects, whe..." current
- 12:35, 19 April 2011 diff hist +252 Nm Hide underscore names Created page with "PyMOL uses names prefixed with "_" (underscore) as special internal objects and selections. Setting "hide_underscore_names" in PyMOL will hide these objects or selections from t..." current
- 10:26, 19 April 2011 diff hist +1,371 N SelectClipped Created page with "This script selects those atoms that are == The Code == <source lang="python"> from pymol import cmd def clipped_by(at,v): x,y,z = at.coord nz = v[2]*(x-v[12])+v[5]*(y-v[1..."
- 14:23, 18 April 2011 diff hist -5 m Fetching scripts
- 15:15, 13 April 2011 diff hist -2 Volume
- 15:14, 13 April 2011 diff hist -377 Volume
- 15:13, 13 April 2011 diff hist +569 Volume →Examples
- 12:50, 13 April 2011 diff hist +245 N Button mode name Created page with "Button_mode_name is the textual description of the current state of the mouse mode matrix. Current options are: * 3-Button Maestro * 3-Button Viewing * 3-Button Edi..." current
- 20:15, 12 April 2011 diff hist +154 N Bg rgb bottom Created page with "This value, when bg_gradient is set, provides the bottom color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_top" current
- 20:14, 12 April 2011 diff hist +154 N Bg rgb top Created page with "This value, when bg_gradient is set, provides the top color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_bottom" current
- 16:00, 12 April 2011 diff hist -8 Connect mode
- 14:46, 12 April 2011 diff hist +56 Connect mode
- 12:59, 11 April 2011 diff hist +240 N Bg gradient Created page with "Enable background gradients in the viewer window. (Does not yet ray trace.) 350px|set bg_gradient = Usage = <source lang="python"> # enable set bg_grad..."
- 12:59, 11 April 2011 diff hist +19 N File:Bg grad.png background gradient current
- 12:56, 11 April 2011 diff hist +39 N File:Screen shot 2011-04-11 at 12.55.49 PM.png Example image with the bg_gradient set. current
- 02:13, 8 April 2011 diff hist +336 N Ray direct shade Created page with "This setting heavily hints the shading from the viewer's POV. For example, without this set: 300px and with this set, 300px = Usag..." current
- 02:12, 8 April 2011 diff hist +19 N File:Shade.png ray_direct_shade on current
- 02:11, 8 April 2011 diff hist +20 N File:No shade.png ray_direct_shade off current
- 02:09, 8 April 2011 diff hist +48 N Ray blend red Created page with "See Ray_blend_colors. Category:Settings" current
- 02:09, 8 April 2011 diff hist +48 N Ray blend green Created page with "See Ray_blend_colors. Category:Settings" current
- 02:08, 8 April 2011 diff hist +48 N Ray blend blue Created page with "See Ray_blend_colors. Category:Settings" current
- 02:07, 8 April 2011 diff hist +549 N Ray blend colors Created page with "When ray_blend_colors is set, it knocks out the RGB component of the ray_blend_red, ray_blend_green, ray_blend_blue. For example, without blending a rainbow pict..." current
- 02:04, 8 April 2011 diff hist +15 N File:Ray blend red.png red blended out current
- 02:03, 8 April 2011 diff hist +13 N File:Ray blend off.png ray blend off current
- 21:14, 1 April 2011 diff hist +324 Volume
- 21:09, 1 April 2011 diff hist +55 N Volume color Created page with "Coming soon. Category:Commands Category:Volume"
- 21:08, 1 April 2011 diff hist +57 N Volume Created page with "Coming soon. Category:Commands Category:Volume"
- 12:55, 1 April 2011 diff hist +190 Stereo 3D Display Options →LCD Displays (120 Hz)
- 00:55, 17 March 2011 diff hist +252 Main Page
- 02:48, 5 March 2011 diff hist +331 Gallery
- 02:47, 5 March 2011 diff hist +31 N File:Rnt.png Ray-normal transparency example current
- 02:45, 5 March 2011 diff hist +1,050 Gallery
- 23:35, 2 March 2011 diff hist +48 HighlightAlignedSS
- 23:34, 2 March 2011 diff hist +1,704 N HighlightAlignedSS Created page with "This script will align and color the paired secondary structures of the two proteins a similar rainbow color. <source lang="python"> import pymol def highlight_aligned_ss(obj1,..."
- 23:33, 2 March 2011 diff hist +50 N File:Highlight ss1.png example of common highlighted secondary structures current
- 15:46, 15 February 2011 diff hist +268 Covers
- 15:43, 15 February 2011 diff hist +32 N File:Salam.jpg mol. micro. Volume 79, Feb, 2011 current
- 14:57, 11 February 2011 diff hist +372 Category:Script Library
- 16:20, 8 February 2011 diff hist +111 Main Page
- 16:08, 8 February 2011 diff hist +156 Map set
- 16:06, 8 February 2011 diff hist +48 N File:Map set ex.png Example consensus volume of the aligned ligands. current
- 16:05, 8 February 2011 diff hist +4 Map set
- 16:04, 8 February 2011 diff hist +1,647 N Map set Created page with "Map_set provides a number of common operations on and between maps. For example, with Map_set you can add two maps together or create a consensus map from a series of ma..."
- 14:50, 7 February 2011 diff hist -103 Spec reflect current
- 11:29, 7 February 2011 diff hist +825 N Quick dist Created page with "'''quick_dist''' will quickly find and write out the pairwise distances between two selections in PyMOL. On my machine this will write about 80,000 distance measures/second. <..." current
- 10:41, 1 February 2011 diff hist +76 APBS →Tiger (10.4)
- 10:39, 1 February 2011 diff hist +28 N File:Apbs ex.png Side-by-side map comparisons current
- 18:20, 30 January 2011 diff hist -1 Roving delay current
- 18:19, 30 January 2011 diff hist -1 Mdo
- 14:03, 27 January 2011 diff hist +2,231 m Main Page Reverted edits by Yaketand (Talk) to last revision by Tlinnet
- 19:42, 4 January 2011 diff hist +180 N Talk:ColorByDisplacement Created page with 'This looks cool. It seems you forgot to post the code for the functions: :: * ColorByDisplacementCA :: * ColorByDisplacementAll ~~~~'
- 12:52, 2 December 2010 diff hist +9 Stereo Mode
- 12:52, 2 December 2010 diff hist +65 Stereo Mode
- 12:51, 2 December 2010 diff hist 0 N File:Anaglyph1.png current
- 12:50, 2 December 2010 diff hist +366 Stereo Mode
- 10:00, 2 December 2010 diff hist +28 Sidechaincenters
- 10:00, 2 December 2010 diff hist +28 AAindex
- 09:57, 2 December 2010 diff hist +1,333 N SaveGroup Created page with 'This script creates the command "saveGroup". saveGroup will save the specified group to disk as one file with all group objects in it, or as many files one pdb in each file.…' current
- 09:52, 2 December 2010 diff hist +15 ToGroup
- 14:04, 23 November 2010 diff hist +99 Category talk:Objects and Selections current
- 14:18, 17 November 2010 diff hist +5 Autodock plugin →Installation