Commands

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Commands are functions in pymol that are used for viewing, manipulating, and storing molecules.

The PyMOLWiki has a complete list of commands in PyMOL. Just check out the Commands' category page.

You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:

INPUT/OUTPUT
- load
- save
- delete
- quit

VIEW
- turn
- move
- clip
- rock
- show
- hide
- enable
- disable
- reset
- refresh
- rebuild
- zoom
- origin
- orient
- view
- get_view
- set_view

MOVIES
- mplay
- mstop
- mset
- mdo
- mpng
- mmatrix
- frame
- rewind
- middle
- ending
- forward
- backward

IMAGING
- png
- mpng

RAY TRACING
- ray

MAPS
- isomesh
- isodot

DISPLAY
- cls
- viewport
- splash

SELECTIONS
- select
- mask

SETTINGS
- set
- button

ATOMS
- alter
- alter_state

EDITING
- create
- replace
- remove
- h_fill
- remove_picked
- edit
- bond
- unbond
- h_add
- fuse
- undo
- redo
- protect
- cycle_valence
- attach

FITTING
- fit
- rms
- rms_cur
- pair_fit
- intra_fit
- intra_rms
- intra_rms_cur

COLORS
- color
- set_color

HELP
- help
- commands

DISTANCES
- dist

STEREO
- stereo

SYMMETRY
- symexp

SCRIPTS
- @
- run

LANGUAGE
- alias
- extend

Retrieved from "http://pymolwiki.org/index.php?title=Commands&oldid=6276"

Commands