Difference between revisions of "Category:ObjSel Scripts"
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− | * [[ConnectedCloud]] | + | * [[ConnectedCloud]] |
− | * [[Color Objects]] | + | ::Find connected clouds of objects in PyMOL |
− | * [[FindSeq]] | + | * [[Color Objects]] |
− | * [[Get Coordinates I]] | + | :: Colors all objects differently (Python script). |
− | * [[Get Coordinates II]] | + | * [[FindSeq]] |
− | * [[grepsel]] | + | :: Find sequence or regular expression of amino acids in a protein. |
− | * [[List Selection]] | + | * [[Get Coordinates I]] |
− | * [[List Colors]] | + | :: Retrieves atom coordinates as Python objects. |
− | * [[List Secondary Structures]] | + | * [[Get Coordinates II]] |
− | * [[Selection Exists]] | + | :: Retrieves atom coordinates as Python array (list object). |
− | * [[Split Movement]] | + | * [[grepsel]] |
− | * [[toGroup]] | + | :: Make named selections using regular expressions (protein sequence). |
− | * [[Zero_residues]] | + | * [[List Selection]] |
+ | :: Prints a list of all residues in a selection (both Python and .pml). | ||
+ | * [[List Colors]] | ||
+ | :: Lists the color of all residues in a selection (both Python and .pml). | ||
+ | * [[List Secondary Structures]] | ||
+ | :: Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS'). | ||
+ | * [[Selection Exists]] | ||
+ | :: Python method that returns true if a selection of a given name exists. | ||
+ | * [[Split Movement]] | ||
+ | :: Moves two parts of one object into different directions. | ||
+ | * [[toGroup]] | ||
+ | :: Convert a multistate object into a group of single state objects. | ||
+ | * [[Zero_residues]] | ||
+ | :: Renumber residues such that the first residue is 0. Useful for alignments. | ||
[[Category:Script_Library]] | [[Category:Script_Library]] |
Revision as of 18:29, 22 May 2009
- Find connected clouds of objects in PyMOL
- Colors all objects differently (Python script).
- Find sequence or regular expression of amino acids in a protein.
- Retrieves atom coordinates as Python objects.
- Retrieves atom coordinates as Python array (list object).
- Make named selections using regular expressions (protein sequence).
- Prints a list of all residues in a selection (both Python and .pml).
- Lists the color of all residues in a selection (both Python and .pml).
- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
- Python method that returns true if a selection of a given name exists.
- Moves two parts of one object into different directions.
- Convert a multistate object into a group of single state objects.
- Renumber residues such that the first residue is 0. Useful for alignments.
Pages in category "ObjSel Scripts"
The following 39 pages are in this category, out of 39 total.