Difference between revisions of "Category:ObjSel Scripts"
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(Created page with '* ConnectedCloud -- Find connected clouds of objects in PyMOL * Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments. * [[List Sele...') |
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* [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL | * [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL | ||
| − | * [[ | + | * [[Color Objects]] -- Colors all objects differently (Python script). |
| + | * [[FindSeq]] -- Find sequence or regular expression of amino acids in a protein. | ||
| + | * [[Get Coordinates I]] -- Retrieves atom coordinates as Python objects. | ||
| + | * [[Get Coordinates II]] -- Retrieves atom coordinates as Python array (list object). | ||
| + | * [[grepsel]] -- Make named selections using regular expressions (protein sequence). | ||
* [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml). | * [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml). | ||
* [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml). | * [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml). | ||
* [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS'). | * [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS'). | ||
* [[Selection Exists]] -- Python method that returns true if a selection of a given name exists. | * [[Selection Exists]] -- Python method that returns true if a selection of a given name exists. | ||
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* [[Split Movement]] -- Moves two parts of one object into different directions. | * [[Split Movement]] -- Moves two parts of one object into different directions. | ||
| + | * [[Zero_residues]] -- Renumber residues such that the first residue is 0. Useful for alignments. | ||
[[Category:Script_Library]] | [[Category:Script_Library]] | ||
Revision as of 09:46, 5 May 2009
- ConnectedCloud -- Find connected clouds of objects in PyMOL
- Color Objects -- Colors all objects differently (Python script).
- FindSeq -- Find sequence or regular expression of amino acids in a protein.
- Get Coordinates I -- Retrieves atom coordinates as Python objects.
- Get Coordinates II -- Retrieves atom coordinates as Python array (list object).
- grepsel -- Make named selections using regular expressions (protein sequence).
- List Selection -- Prints a list of all residues in a selection (both Python and .pml).
- List Colors -- Lists the color of all residues in a selection (both Python and .pml).
- List Secondary Structures -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
- Selection Exists -- Python method that returns true if a selection of a given name exists.
- Split Movement -- Moves two parts of one object into different directions.
- Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments.
Pages in category "ObjSel Scripts"
The following 39 pages are in this category, out of 39 total.