Difference between revisions of "Category:ObjSel Scripts"

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(Created page with '* ConnectedCloud -- Find connected clouds of objects in PyMOL * Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments. * [[List Sele...')
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Revision as of 08:36, 30 April 2009

  • ConnectedCloud -- Find connected clouds of objects in PyMOL
  • Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments.
  • List Selection -- Prints a list of all residues in a selection (both Python and .pml).
  • List Colors -- Lists the color of all residues in a selection (both Python and .pml).
  • List Secondary Structures -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
  • Selection Exists -- Python method that returns true if a selection of a given name exists.
  • Color Objects -- Colors all objects differently (Python script).
  • Get Coordinates I -- Retrieves atom coordinates as Python objects.
  • Get Coordinates II -- Retrieves atom coordinates as Python array (list object).
  • grepsel -- Make named selections using regular expressions (protein sequence).
  • Split Movement -- Moves two parts of one object into different directions.