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- PyMOL now comes with some builtin examples: look in the examples directory of your source tree.
- group command has been added.
- The truly awesome grid_mode setting has been added.
- Ellipsoids representation added for drawing thermal ellipsoids.
- GetNamesInSel — find the names of all objects in a selection.
- CalcArea — find the area of any given object/selection;
- ConnectedCloud — find connected clouds of objects in PyMOL.
- MakeVinaCommand — Use PyMOL to create a valid command line for the new Vina docking software.
- DrawBoundingBox — Draw a bounding box around your selection.
- Locate loaded PyMOL objects that are nearby some other object with FindObjectsNearby.
- Ever wanted to load all the PDBs in a directory within PyMOL? Now you can load all files in a dir with LoadDir.
- PDB Web Services Script — Example using PyMOL and the PDB Web Services.
- LigAlign — Ligand-based active site alignment and comparison.
- Added a simple script for finding the center or mass, or moving a selection to the origin.
- Added links in the table on the Main Page (above) for submitting & tracking bugs and feature reqeuests. ♦ New logo for the wiki. It's DNA. You can easily see the major/minor grooves. If you don't see it, force a reload of the page (CTRL-F5, usually).
- New category about PyMOL performance: making the impossible possible, and the difficult easier/faster.
- ImmersiveViz -- Headtracking user interface for PyMOL (watch the video)!
- Colorama --a PyMOL plugin which allows to color objects using adjustable scale bars
- ProMOL plugin added. Catalytic site prediction, other tools. Redirects to website.
- EMovie plugin added. Easy movies in PyMol using a GUI.
- DYNMAP plugin page created. Check it out!
- EZ-Viz
- Stereo 3D Displays.
- Massively restructured the TOPTOC and make the OLD_TOPTOC for the older version. Still need to add more content to the TOPTOC.
- Added a simple script for removing specific alternately located atoms.
- Added a starter gallery of PyMOL-created Journal Covers.
- Added some information on how PyMOL handles Nonstandard_Amino_Acids.
- Downtime: The PyMOLWiki underwent some downtime due to FS problems. There are also upgrades planned for this week, so we may expect a little downtime for that. We've been very fortunate to have hosting from BitGnome.Net; they've done an incredible job!
- Gallery -- Did you make a cool image? Pop it into the PyMOLWiki Gallery with the PyMOL command you used. Looking for a particular representation--start here (new!).
- Updated the wiki. Also installed the newer GeSHI extension. Please keep an eye out for source code that is improperly tagged and so improperly formatted. See GeSHI Parameters.
- Adding a special category/section for active PyMOL Development.
- PyMOL 1.0 has been released!
- PyMOL Official Documentation is also available for subscribers.
- New PyMol Features: Nucleic Acid Representation Settings & Examples.
- Cool new Plug-In: Show NMR Constrains.
- Check out PyMol's new Nucleic Acid Rendering
- Added DynoPlot script for plotting data within PyMol; an interactive Ramachandran plot.
- Added Kabsch script for optimal alignment of two sets of vectors.
- Some details have been released about 0.99beta11's release and new features.
- A new map function is in the beta build, Map_Trim.
- Details on how to build peptide sequences and nucleic acid sequences by hand.
- New Transform_odb script to transform coordinates with .odb file from O or LSQMAN
- PyMol gets some new features. PyMol 0.99beta07 added these commands for testing, check out the new
- CE Align v0.8-RBS released. Better than before. See test case comparisons.
- Slerpy, a set of pymol command extensions to simplify complex movie making is now available.
- Updated the Kabsch code with a more elegant solution; fixed a small rotation bug.