User contributions for Inchoate

17 June 2011

• 18:5518:55, 17 June 2011 diff hist −163‎ Covers ‎No edit summary
• 18:5418:54, 17 June 2011 diff hist +163‎ Covers ‎No edit summary

15 June 2011

• 20:2720:27, 15 June 2011 diff hist +112‎ FocalBlur ‎ →‎Examples
• 20:2420:24, 15 June 2011 diff hist 0‎ N File:Focal blur ex6.png ‎No edit summary current
• 20:2320:23, 15 June 2011 diff hist 0‎ N File:Focal blur ex ap3.png ‎No edit summary current
• 20:2320:23, 15 June 2011 diff hist 0‎ N File:Focal blur ex ap3 mode3.png ‎No edit summary current
• 20:2320:23, 15 June 2011 diff hist 0‎ N File:Focal blur ex ap3 mode2.png ‎No edit summary current
• 20:2320:23, 15 June 2011 diff hist 0‎ N File:Focal blur ex ap3 mode1.png ‎No edit summary current

8 June 2011

• 21:2321:23, 8 June 2011 diff hist +129‎ Covers ‎No edit summary
• 21:2121:21, 8 June 2011 diff hist 0‎ N File:MolecularCell011.jpg ‎No edit summary current

7 June 2011

• 08:5908:59, 7 June 2011 diff hist −35‎ Main Page ‎No edit summary
• 08:5808:58, 7 June 2011 diff hist +93‎ Main Page ‎No edit summary

27 May 2011

• 13:1913:19, 27 May 2011 diff hist +357‎ N Chromadepth ‎ Created page with "Chromadepth is a type of stereo 3D that uses color to encode depth. Reds are closer to the viewer, blue are farther away. This has been implemented in PyMOL and will be stereo_..."
• 13:1613:16, 27 May 2011 diff hist 0‎ N File:Chroma 3d5.png ‎No edit summary current
• 13:1613:16, 27 May 2011 diff hist 0‎ N File:Chroma 3d4.png ‎No edit summary current
• 13:1613:16, 27 May 2011 diff hist 0‎ N File:Chroma 3d3.png ‎No edit summary current
• 13:1613:16, 27 May 2011 diff hist 0‎ N File:Chroma 3d2.png ‎No edit summary current
• 13:1613:16, 27 May 2011 diff hist 0‎ N File:Chroma 3d.png ‎No edit summary current

24 May 2011

• 09:4709:47, 24 May 2011 diff hist +25‎ Cache ‎No edit summary current

21 May 2011

• 14:2714:27, 21 May 2011 diff hist +58‎ Covers ‎No edit summary
• 14:2514:25, 21 May 2011 diff hist 0‎ N File:Cen.jpg ‎No edit summary current

19 May 2011

• 21:5421:54, 19 May 2011 diff hist +47‎ Annotation wizard ‎No edit summary
• 21:5321:53, 19 May 2011 diff hist 0‎ N File:Ann.png ‎No edit summary current
• 21:5321:53, 19 May 2011 diff hist +3,586‎ N Annotation wizard ‎ Created page with "Here's an example of using the annotation wizard: <source lang="python"> import pymol ..."

17 May 2011

• 13:2213:22, 17 May 2011 diff hist +447‎ N Pdb reformat names mode ‎ Created page with "pdb_reformat_names_mode sets atom naming for PDB files as it reads them. = Usage = <source lang="python"> # example usage, set to amber compliant set pdb_reformat_names_mo..." current

6 May 2011

• 14:3514:35, 6 May 2011 diff hist +243‎ PLoS ‎ →‎Overview, general notes

27 April 2011

• 23:4823:48, 27 April 2011 diff hist +46‎ Gallery ‎No edit summary
• 23:4423:44, 27 April 2011 diff hist +43‎ N File:Depthmol.mpeg ‎ depth enhanced ambient occlusion-like movie
• 13:1013:10, 27 April 2011 diff hist 0‎ Cealign plugin ‎No edit summary

25 April 2011

• 12:3912:39, 25 April 2011 diff hist +252‎ N Ribbon transparency ‎ Created page with "In version v1.4.1 of PyMOL, we can now render transparent ribbons. This setting controls the level of transparency for the ribbons. <gallery widths=400 heights=300> Image:Tp_ri..." current
• 12:3812:38, 25 April 2011 diff hist +19‎ N File:Tp ribbon.png ‎ transparent ribbons current

22 April 2011

• 17:4317:43, 22 April 2011 diff hist +301‎ N State counter mode ‎ Created page with "This setting controls whether or not the object-specific state counter is shown and how it's shown: Values: '''0, off''' :: off '''1, on''' :: on, fractional mode (eg. X/Y, mea..." current
• 15:3115:31, 22 April 2011 diff hist +114‎ N Selection visible only ‎ Created page with "If this setting is turned on, then PyMOL will only show indicator dots for visible objects. Category:Settings" current
• 15:3015:30, 22 April 2011 diff hist +270‎ N Selection round points ‎ Created page with "This setting controls the shape of PyMOL's indicator dots. If set, it'll round the edges, if not rectangular. <gallery widths=400px heights=280> File:Selection_overaly1.png|Rou..." current
• 15:2815:28, 22 April 2011 diff hist +273‎ N Selection overlay ‎ Created page with "selection_overlay changes how PyMOL draws the selection indicator dots. If enabled, the indicators are drawn above the atoms, else underneath. <gallery> Image:Selection ove..." current
• 15:2515:25, 22 April 2011 diff hist +15‎ N File:Selection roundpts1.png ‎ round points on current
• 15:2515:25, 22 April 2011 diff hist +34‎ N File:Selection overaly1.png ‎ selection indicators overlay atoms current
• 15:2415:24, 22 April 2011 diff hist +30‎ N File:Selection overaly0.png ‎ selection overlays atoms (off) current
• 12:4012:40, 22 April 2011 diff hist +214‎ N Max ups ‎ Created page with "Setting max_ups (updates per second) sets how quickly PyMOL redraws itself. Set to 0, PyMOL draws as quickly as possible; set to 10, PyMOL would redraw the screen 10 times a..." current
• 12:3012:30, 22 April 2011 diff hist +237‎ N Static singletons ‎ Created page with "If set, static_singletons will always show single-state objects in the viewer, regardless of 'scene' or 'global' state. Turning this off, will hide single-state objects, whe..." current

19 April 2011

• 12:3512:35, 19 April 2011 diff hist +252‎ Nm Hide underscore names ‎ Created page with "PyMOL uses names prefixed with "_" (underscore) as special internal objects and selections. Setting "hide_underscore_names" in PyMOL will hide these objects or selections from t..." current
• 10:2610:26, 19 April 2011 diff hist +1,371‎ N SelectClipped ‎ Created page with "This script selects those atoms that are == The Code == <source lang="python"> from pymol import cmd def clipped_by(at,v): x,y,z = at.coord nz = v[2]*(x-v[12])+v[5]*(y-v[1..."

18 April 2011

• 14:2314:23, 18 April 2011 diff hist −5‎ m Fetching scripts ‎No edit summary

13 April 2011

• 15:1515:15, 13 April 2011 diff hist −2‎ Volume ‎No edit summary
• 15:1415:14, 13 April 2011 diff hist −377‎ Volume ‎No edit summary
• 15:1315:13, 13 April 2011 diff hist +569‎ Volume ‎ →‎Examples
• 12:5012:50, 13 April 2011 diff hist +245‎ N Button mode name ‎ Created page with "Button_mode_name is the textual description of the current state of the mouse mode matrix. Current options are: * 3-Button Maestro * 3-Button Viewing * 3-Button Edi..." current

12 April 2011

• 20:1520:15, 12 April 2011 diff hist +154‎ N Bg rgb bottom ‎ Created page with "This value, when bg_gradient is set, provides the bottom color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_top" current
• 20:1420:14, 12 April 2011 diff hist +154‎ N Bg rgb top ‎ Created page with "This value, when bg_gradient is set, provides the top color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_bottom" current
• 16:0016:00, 12 April 2011 diff hist −8‎ Connect mode ‎No edit summary