User contributions for Inchoate
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17 April 2009
- 16:3516:35, 17 April 2009 diff hist +93 Extend No edit summary
- 16:3416:34, 17 April 2009 diff hist +77 Ribbon color No edit summary current
- 16:3216:32, 17 April 2009 diff hist +21 Deprotect No edit summary
- 16:3116:31, 17 April 2009 diff hist +22 Selection Macros No edit summary
- 16:3116:31, 17 April 2009 diff hist +22 Seq view unaligned color No edit summary current
- 16:3116:31, 17 April 2009 diff hist +22 Seq view color No edit summary current
- 16:3016:30, 17 April 2009 diff hist +22 Seq view label color No edit summary current
- 16:3016:30, 17 April 2009 diff hist 0 Label color No edit summary
- 16:3016:30, 17 April 2009 diff hist +22 Label color No edit summary
- 16:3016:30, 17 April 2009 diff hist +21 Label outline color No edit summary current
- 16:2916:29, 17 April 2009 diff hist +22 Color Objects No edit summary
- 16:2916:29, 17 April 2009 diff hist +51 Set Color No edit summary
- 16:2916:29, 17 April 2009 diff hist +52 Bg Color No edit summary
- 16:1316:13, 17 April 2009 diff hist +1 Practical Pymol for Beginners No edit summary
- 16:1216:12, 17 April 2009 diff hist +1,586 Practical Pymol for Beginners →Saving work
- 16:0316:03, 17 April 2009 diff hist +356 Practical Pymol for Beginners →Scripting
- 15:5615:56, 17 April 2009 diff hist +2,194 Practical Pymol for Beginners →Scripting
- 15:4315:43, 17 April 2009 diff hist +94 Practical Pymol for Beginners →What else can this thing do?
- 15:4115:41, 17 April 2009 diff hist +140 Practical Pymol for Beginners →Getting started: explore a protein
- 15:4015:40, 17 April 2009 diff hist +26 Practical Pymol for Beginners →Getting started: explore a protein
- 15:3715:37, 17 April 2009 diff hist +20 Practical Pymol for Beginners →The PyMol Interface
- 15:3615:36, 17 April 2009 diff hist +489 N Category:Specular Reflections New page: '''Specular reflection''' is the perfect, mirror-like reflection of light (or sometimes other kinds of wave) from a surface, in which light from a single incoming direction (a ray) is refl... current
- 15:3315:33, 17 April 2009 diff hist +459 N Specular intensity New page: = Overview = This controls how PyMOL displays specular reflections in the GUI (unrendered). This is analogous to Spec_power for ray traced images. Values range form [0, 200+]. = Syn... current
- 15:3015:30, 17 April 2009 diff hist +422 N Specular New page: = Overview = This controls whether or not specular reflections are shown unrendered, in the GUI. Turning this off only makes a slight improvement in speed. = Syntax = <source lang="pytho...
- 15:2615:26, 17 April 2009 diff hist +14 Spec power No edit summary current
- 15:2615:26, 17 April 2009 diff hist +309 N Spec power New page: = Overview = This setting controls the power of specular reflections. = Syntax = <source> # set the power set spec_power, float # turn up the reflections set spec_power, 200 </source> =...
- 15:2615:26, 17 April 2009 diff hist +711 N Spec direct power New page: = Overview = This controls the direct specular power. Essentially, this is how strongly surfaces that are perpendicular to the ray drawn from the camera are rendered. The features seems ... current
- 15:2515:25, 17 April 2009 diff hist +34 Spec reflect No edit summary
- 15:2315:23, 17 April 2009 diff hist 0 N File:Spec dir power.gif No edit summary current
- 15:1615:16, 17 April 2009 diff hist +566 Nm Spec direct New page: = Overview = This setting controls how PyMOL renders the direct specular reflection from a representation. This image shows an increasing Spec_direct setting from 0 to 1.0 [[Image:Sp... current
- 15:1415:14, 17 April 2009 diff hist +22 N File:Spec direct.gif increasing spec_direct current
- 14:5714:57, 17 April 2009 diff hist +511 N Solvent radius New page: = Overview = This defines the solvent radius. Changing the solvent radius in PyMOL affects how PyMOL interprets surfaces, [[Displaying_Biochemical_Properties#Surface-R... current
- 13:5413:54, 17 April 2009 diff hist −18 Main Page No edit summary
- 13:4713:47, 17 April 2009 diff hist +866 N Opaque background New page: = Overview = This setting controls how PyMOL renders the background. If this opaque setting is '''on''' then the background is drawn as a solid color depending on your background color se... current
- 13:4313:43, 17 April 2009 diff hist +24 N File:Sq2.png Surface_quality set to 2 current
- 13:4113:41, 17 April 2009 diff hist +9 Surface quality No edit summary
- 13:3913:39, 17 April 2009 diff hist +355 N Ellipsoid color New page: = Overview = This setting controls the color of ellipsoids. = Syntax = <source lang="python"> # proper settings are colors set ellipsoid_color, color # for example set it to blue set ell... current
- 13:3913:39, 17 April 2009 diff hist +1,185 N Surface quality New page: = Overview = This controls how well PyMOL draws surfaces. Lower values, like 0, are rough surface approximations. These low values are good for speed--especially for larger surfaces. Fo...
- 13:3813:38, 17 April 2009 diff hist +591 N Ellipsoid quality New page: = Overview = This setting determines how much refinement PyMOL uses in rendering ellipsoids. Other representations have similar settings. The most often use...
- 13:3713:37, 17 April 2009 diff hist +22 Color No edit summary
- 13:3113:31, 17 April 2009 diff hist +25 N File:Sq0.png Surface quality down to 0 current
- 13:3113:31, 17 April 2009 diff hist +26 N File:Sqd.png surface_quality to default current
- 13:2213:22, 17 April 2009 diff hist +361 N Ellipsoid scale New page: = Overview = This sets the relative scale of drawing Ellipsoids. Larger numbers make larger ellipsoids. = Syntax = <source lang="python"> # set to some real valued size set ellipsoid... current
- 13:2113:21, 17 April 2009 diff hist +492 N Ellipsoid transparency New page: = Overview = This controls the level of Transparency with which PyMOL renders ellipsiods. Setting this to 0 means full opacity (no transparency); setting this to 1.0 means fully trans... current
16 April 2009
- 11:0911:09, 16 April 2009 diff hist +103 N Seq view alignment New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 11:0911:09, 16 April 2009 diff hist +104 N Seq view discrete by state New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 11:0911:09, 16 April 2009 diff hist +104 N Seq view unaligned mode New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 11:0911:09, 16 April 2009 diff hist +276 N Seq view unaligned color New page: = Overivew = Sets the colors of unaligned residues in the sequence viewer. = Syntax = <source lang="python"> # set the color set seq_view_unaligned_color, color # for example set seq_vie...
- 11:0611:06, 16 April 2009 diff hist +597 N Seq view label spacing New page: = Overivew = This controls how the sequence indices are shown in the sequence viewer. Setting this to 1 means every index will be shown, setting this to 5, means that every 5th residue in... current
- 11:0511:05, 16 April 2009 diff hist +40 N File:Svl10.png Sequence_viewer label spacing set to 10. current
