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News & Updates New Plugin PySSA aims to combine PyMOL and ColabFold to enable the prediction and analysis of 3D protein structures for the scientific end-user. v1.0 has been released on July 10, 2024. Official Release PyMOL v3.0 has been released on March 12, 2024. New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models Official Release PyMOL v2.5 has been released on May 10, 2021. Python 3 New Python 3 compatibility guide for scripts and plugins POSF New PyMOL fellowship announced for 2022-2023 Tutorial Plugins Tutorial updated for PyQt5 New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons Older News See Older News.

Did you know... HighlightAlignedSS This script will align and color the paired secondary structures of the two proteins a similar rainbow color. <source lang="python"> from pymol import cmd, util def highlight_aligned_ss(obj1,obj2,transform=1,quiet=1): """ DESCRIPTION Aligns two structures and colors their matching secondary structure elements with a matching rainbow colorscheme. USAGE highlight_aligned_ss obj1, obj2 If transform=0 then the proteins are not moved after alignment. EXAMPLES highlight_aligned_ss 1cll, 1ggz highlight_aligned_ss 1rlw, 1byn and state 1 SEE ALSO align JV 3-2-11 """ if not cmd.count_atoms(obj1): print "Error: Object 1 needs at least a few atoms to align." return None if not cmd.count_atoms(obj2): print "Error: Object 2 needs at least a few atoms to align." return None # align them uAln = cmd.get_unused_name("aln") cmd.align(obj1,obj2,object=uAln,transform=int(transform)) ..→

A Random PyMOL-generated Cover. See Covers.