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News & Updates
New Setup PyMOL-open-source-windows-setup v3.1 has been released on January 20, 2025. More information under Windows Install.
New Plugin PySSA aims to combine PyMOL and ColabFold to enable the prediction and analysis of 3D protein structures for the scientific end-user. v1.0 has been released on July 10, 2024.
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
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== Overview ==

set cartoon_side_chain_helper is an easy way, in cartoon mode, to only show the side chain of a residue.

For residues represented in cartoon (but not ribbon) form, if you show the residue also in stick or wireframe cartoon_side_chain_helper hides backbone atoms. Showing the sidechain in this method distorts the cartoon shape so it joins with the sidechain, effectively over-riding any cartoon_flat_cycles setting for that residue.

Syntax

set cartoon_side_chain_helper, off            
set cartoon_side_chain_helper, 0              #off

set cartoon_side_chain_helper, on             
set cartoon_side_chain_helper, 1              #on

Example

See Also

Ribbon_side_chain_helper

A Random PyMOL-generated Cover. See Covers.