Covers
Appearance
PyMOL-created Journal Covers
[edit]Part of PyMOL's popularity comes from the fact that it is very flexible and it offers arbitrarily high-resolution images as output; this make it a great tool for making journal covers or any press-related images.
Here are some of the known PyMOL-created Journal Covers. There are surely more out there. If you have a cover you'd like to add, feel free.
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An elastic network model of the SARS-CoV-2 main protease with N3 inhibitor.. J R Soc Interface, Volume 18, Issue 174, 6 Jan 2021.
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How Molecular Conformational Changes Affect Changes in Free Energy J. Chem. Theory Comput., Volume 11, Number 7, June 2015.
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ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank Nucl Acids Res, Volume 43, Issue D1, January 2015.
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Structure of P. maritima HDGYP domain showing a novel tri-iron catalytic centre Molecular Microbiology, Volume 91, Number 1, January 2014.
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Protection and Deprotection of DNA — High-Temperature Stability of Nucleic Acid Barcodes for Polymer Labeling Angewandte Chemie International Edition, Volume 52, Issue 15, 8 April 2013.
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A dynamic model of long-range conformational adaptations triggered by nucleotide binding in GroEL-GroES Proteins, Volume 80, Issue 10, 2012.
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Protein Science, Vol. 20, No. 12, Dec 2011
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Journal of Polymer Science, Nov 15 2011
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Biophysical Journal, Aug 3 2011
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Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing, [Science, Sept. 16, 2011].
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Deconstructing honeybee vitellogenin J. Exp. Biol., Volume 214, Issue 4, 2011.
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Binding of 14-3-3g to membranes FEBS lett., Volume 585, Issue 8, 2011.
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Image of two short stretches of double-stranded DNA linked by a ruthenium 'light-switch complex', October 25, 2011; 108 (43) [[1]]
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PI3K Inhibitors C&EN, April 11, 2011.
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Microbiology of article entitled "Genetic mapping of the interface between the ArsD metallochaperone and the ArsA ATPase. Volume 79, Feb, 2011, Molecular Microbiology
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Human antibodies coded by the VH3 gene and specific for V3 crown of the HIV-1 gp120 have an antigen-binding site shaped like a soup ladle. Structure, Volume 17, Issue 11, 11 Nov 2009.
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X-ray structure, symmetry and mechanism of an AMPA-subtype glutamate receptor Nature
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Impact of rRNA methylations on ribosome recycling and fidelity of initiation in Escherichia coli. Molecular Microbiology
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Crystal structure of the catalytic domain of the mitotic checkpoint kinase Mps1 in complex with SP600125. Chu ML, Chavas LM, Douglas KT, Eyers PA, Tabernero L. J Biol Chem. 2008 Aug 1;283(31):21495-500. Epub 2008 May 14.
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Allosteric motions in structures of yeast NAD-specific isocitrate dehydrogenase. J. Biol. Chem.
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Shall we dance? How a multicopper oxidase chooses its electron transfer partner. Acc. Chem. Res.
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Crystal structure of the yeast nicotinamidase Pnc1p. Arch. Biochem. Biophys.
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FLT3 Activation by an Oncogenic Insertion Molecular Cell, Volume 13 Number 2, January 30, 2004.
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End-on view of the atomic model of the bacterial actinlike ParM protein double-helical filament, generated from an electron microscopic reconstruction. A Bipolar Spindle of Antiparallel ParM Filaments Drives Bacterial Plasmid Segregation.
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Crystal Structure of the Class D beta-lactamase OXA-1 in complex with doripenem Biochemistry
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MD simulation of protein-protein binding Pymol generated Movie is avialable inside pdf[[2]] or high quality AVI format[3]
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Targeting DNA, BIOCHEMIE, July 1, 2008 Cover, Vol. 90.
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Harnessing Helices, Chemical & Engineering News, June 2, 2008 Cover, Vol. 86, Issue 22.
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Fusarium head blight (FHB), JBC, January 18, 2008 Cover, Vol. 283, Issue 3.
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Pumping Ions, Nature, Dec. 13th, 2007.
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[4], Dec 2007.
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Science, Nov. 23rd, 2007.
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Sensing Calciums[5], Nov 20th, 2007.
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Aminoacyl-tRNA synthetases from human mitochondria[6], Nov. 13th, 2007.
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Science, Oct. 19th, 2007.
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Sensing Acid, Nature, Sept. 20th, 2007.
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Form Finds Function?, Nature, Aug. 16thm 2007.
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Nature Neuroscience Vol. 10 No. 8 Aug. 2007
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Paused transcription complexes, Molecular Cell, August 3 2007 Cover, Vol. 27, Issue 3.
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Vitamin D, ABB, April 14 2007 Cover, Vol. 460, Issue 2.
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Mycobacterium tuberculosis PknD dimerization JBC, April 13 2007 Cover, Vol. 282, Issue 15.
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Auxin Action Revealed, Nature, April 5, 2007.
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Glucose-1-phosphate uridylyltransferase, Protein Science, March 3, 2007 Cover, Volume 16 Issue 3.
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How Ribosomes Work, Chemical & Engineering News, Feb. 19th, 2007.
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HIV's Hidden Weakness, Nature, Feb. 15th, 2007.
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Sen1 Control of RNA Pol II Termination, Molecular Cell, December 8, 2006 Cover, Volume 24 Issue 5.
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Transposon Loops, Molecular Microbiology, December 1, 2006 Cover, Volume 62 Issue 6.
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Glycosylation Engineering, Chemical & Engineering News, Sept. 4th, 2006.
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Chromatin Code Decoded, Nature, Aug. 17th, 2006.
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Halogenases, Chemical & Engineering News, May 22nd, 2006.
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Poly (2S-proline), Protein Science, January 1, 2006 Cover, Volume 15, Issue 1.
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Ribonuclease A, JMB, November 18, 2005 Cover, Volume 354, Issue 1.
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The B to Z of DNA, Nature, Oct. 20th, 2005.
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GalNAc kinase, JBC, September 23, 2005 Cover, Volume 280, Issue 38.
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Neurotransmission, Nature, Sept. 8th, 2005.
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Science, July 22nd, 2005.
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JMB, June 24, 2005 Cover, Volume 349, Issue 5.
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Probing Prions, Nature, June 9th, 2005.
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Science, April 29th, 2005.
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Science, Sept., 10th, 2004.
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Science, Jan. 23rd, 2004.
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Pae SmAP1 14-mers, Protein Science, April 2003.
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Nature, April 27th, 2006.
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Cross-Beta Spine of IAPP, Protein Science, September 2008.
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Calcium Sensor, JBC, August 4, 2006.
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DAXX helical bundle (DHB) and DHB/Rassf1C structures, Structure, December 2010.