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- 14:25, 21 May 2011 diff hist 0 N File:Cen.jpg current
- 21:54, 19 May 2011 diff hist +47 Annotation wizard
- 21:53, 19 May 2011 diff hist 0 N File:Ann.png current
- 21:53, 19 May 2011 diff hist +3,586 N Annotation wizard Created page with "Here's an example of using the annotation wizard: <source lang="python"> import pymol ..."
- 13:22, 17 May 2011 diff hist +447 N Pdb reformat names mode Created page with "pdb_reformat_names_mode sets atom naming for PDB files as it reads them. = Usage = <source lang="python"> # example usage, set to amber compliant set pdb_reformat_names_mo..." current
- 14:35, 6 May 2011 diff hist +243 PLoS →Overview, general notes
- 23:48, 27 April 2011 diff hist +46 Gallery
- 23:44, 27 April 2011 diff hist +43 N File:Depthmol.mpeg depth enhanced ambient occlusion-like movie
- 13:10, 27 April 2011 diff hist 0 Cealign plugin
- 12:39, 25 April 2011 diff hist +252 N Ribbon transparency Created page with "In version v1.4.1 of PyMOL, we can now render transparent ribbons. This setting controls the level of transparency for the ribbons. <gallery widths=400 heights=300> Image:Tp_ri..." current
- 12:38, 25 April 2011 diff hist +19 N File:Tp ribbon.png transparent ribbons current
- 17:43, 22 April 2011 diff hist +301 N State counter mode Created page with "This setting controls whether or not the object-specific state counter is shown and how it's shown: Values: '''0, off''' :: off '''1, on''' :: on, fractional mode (eg. X/Y, mea..." current
- 15:31, 22 April 2011 diff hist +114 N Selection visible only Created page with "If this setting is turned on, then PyMOL will only show indicator dots for visible objects. Category:Settings" current
- 15:30, 22 April 2011 diff hist +270 N Selection round points Created page with "This setting controls the shape of PyMOL's indicator dots. If set, it'll round the edges, if not rectangular. <gallery widths=400px heights=280> File:Selection_overaly1.png|Rou..." current
- 15:28, 22 April 2011 diff hist +273 N Selection overlay Created page with "selection_overlay changes how PyMOL draws the selection indicator dots. If enabled, the indicators are drawn above the atoms, else underneath. <gallery> Image:Selection ove..." current
- 15:25, 22 April 2011 diff hist +15 N File:Selection roundpts1.png round points on current
- 15:25, 22 April 2011 diff hist +34 N File:Selection overaly1.png selection indicators overlay atoms current
- 15:24, 22 April 2011 diff hist +30 N File:Selection overaly0.png selection overlays atoms (off) current
- 12:40, 22 April 2011 diff hist +214 N Max ups Created page with "Setting max_ups (updates per second) sets how quickly PyMOL redraws itself. Set to 0, PyMOL draws as quickly as possible; set to 10, PyMOL would redraw the screen 10 times a..." current
- 12:30, 22 April 2011 diff hist +237 N Static singletons Created page with "If set, static_singletons will always show single-state objects in the viewer, regardless of 'scene' or 'global' state. Turning this off, will hide single-state objects, whe..." current
- 12:35, 19 April 2011 diff hist +252 Nm Hide underscore names Created page with "PyMOL uses names prefixed with "_" (underscore) as special internal objects and selections. Setting "hide_underscore_names" in PyMOL will hide these objects or selections from t..." current
- 10:26, 19 April 2011 diff hist +1,371 N SelectClipped Created page with "This script selects those atoms that are == The Code == <source lang="python"> from pymol import cmd def clipped_by(at,v): x,y,z = at.coord nz = v[2]*(x-v[12])+v[5]*(y-v[1..."
- 14:23, 18 April 2011 diff hist -5 m Fetching scripts
- 15:15, 13 April 2011 diff hist -2 Volume
- 15:14, 13 April 2011 diff hist -377 Volume
- 15:13, 13 April 2011 diff hist +569 Volume →Examples
- 12:50, 13 April 2011 diff hist +245 N Button mode name Created page with "Button_mode_name is the textual description of the current state of the mouse mode matrix. Current options are: * 3-Button Maestro * 3-Button Viewing * 3-Button Edi..." current
- 20:15, 12 April 2011 diff hist +154 N Bg rgb bottom Created page with "This value, when bg_gradient is set, provides the bottom color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_top" current
- 20:14, 12 April 2011 diff hist +154 N Bg rgb top Created page with "This value, when bg_gradient is set, provides the top color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_bottom" current
- 16:00, 12 April 2011 diff hist -8 Connect mode
- 14:46, 12 April 2011 diff hist +56 Connect mode
- 12:59, 11 April 2011 diff hist +240 N Bg gradient Created page with "Enable background gradients in the viewer window. (Does not yet ray trace.) 350px|set bg_gradient = Usage = <source lang="python"> # enable set bg_grad..."
- 12:59, 11 April 2011 diff hist +19 N File:Bg grad.png background gradient current
- 12:56, 11 April 2011 diff hist +39 N File:Screen shot 2011-04-11 at 12.55.49 PM.png Example image with the bg_gradient set. current
- 02:13, 8 April 2011 diff hist +336 N Ray direct shade Created page with "This setting heavily hints the shading from the viewer's POV. For example, without this set: 300px and with this set, 300px = Usag..." current
- 02:12, 8 April 2011 diff hist +19 N File:Shade.png ray_direct_shade on current
- 02:11, 8 April 2011 diff hist +20 N File:No shade.png ray_direct_shade off current
- 02:09, 8 April 2011 diff hist +48 N Ray blend red Created page with "See Ray_blend_colors. Category:Settings" current
- 02:09, 8 April 2011 diff hist +48 N Ray blend green Created page with "See Ray_blend_colors. Category:Settings" current
- 02:08, 8 April 2011 diff hist +48 N Ray blend blue Created page with "See Ray_blend_colors. Category:Settings" current
- 02:07, 8 April 2011 diff hist +549 N Ray blend colors Created page with "When ray_blend_colors is set, it knocks out the RGB component of the ray_blend_red, ray_blend_green, ray_blend_blue. For example, without blending a rainbow pict..." current
- 02:04, 8 April 2011 diff hist +15 N File:Ray blend red.png red blended out current
- 02:03, 8 April 2011 diff hist +13 N File:Ray blend off.png ray blend off current
- 21:14, 1 April 2011 diff hist +324 Volume
- 21:09, 1 April 2011 diff hist +55 N Volume color Created page with "Coming soon. Category:Commands Category:Volume"
- 21:08, 1 April 2011 diff hist +57 N Volume Created page with "Coming soon. Category:Commands Category:Volume"
- 12:55, 1 April 2011 diff hist +190 Stereo 3D Display Options →LCD Displays (120 Hz)
- 00:55, 17 March 2011 diff hist +252 Main Page
- 02:48, 5 March 2011 diff hist +331 Gallery
- 02:47, 5 March 2011 diff hist +31 N File:Rnt.png Ray-normal transparency example current