Category:ObjSel Scripts: Difference between revisions

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* [[ConnectedCloud]] — Find connected clouds of objects in PyMOL
* [[ConnectedCloud]]  
* [[Color Objects]] — Colors all objects differently (Python script).
::Find connected clouds of objects in PyMOL
* [[FindSeq]] — Find sequence or regular expression of amino acids in a protein.
* [[Color Objects]]
* [[Get Coordinates I]] — Retrieves atom coordinates as Python objects.
:: Colors all objects differently (Python script).
* [[Get Coordinates II]] — Retrieves atom coordinates as Python array (list object).
* [[FindSeq]]
* [[grepsel]] — Make named selections using regular expressions (protein sequence).
:: Find sequence or regular expression of amino acids in a protein.
* [[List Selection]] — Prints a list of all residues in a selection (both Python and .pml).
* [[Get Coordinates I]]
* [[List Colors]] — Lists the color of all residues in a selection (both Python and .pml).
:: Retrieves atom coordinates as Python objects.
* [[List Secondary Structures]] — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[Get Coordinates II]]
* [[Selection Exists]] — Python method that returns true if a selection of a given name exists.
:: Retrieves atom coordinates as Python array (list object).
* [[Split Movement]] — Moves two parts of one object into different directions.
* [[grepsel]]  
* [[toGroup]] — Convert a multistate object into a group of single state objects.
:: Make named selections using regular expressions (protein sequence).
* [[Zero_residues]] — Renumber residues such that the first residue is 0.  Useful for alignments.
* [[List Selection]]
:: Prints a list of all residues in a selection (both Python and .pml).
* [[List Colors]]
:: Lists the color of all residues in a selection (both Python and .pml).
* [[List Secondary Structures]]
:: Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[Selection Exists]]
:: Python method that returns true if a selection of a given name exists.
* [[Split Movement]]
:: Moves two parts of one object into different directions.
* [[toGroup]]
:: Convert a multistate object into a group of single state objects.
* [[Zero_residues]]
:: Renumber residues such that the first residue is 0.  Useful for alignments.


[[Category:Script_Library]]
[[Category:Script_Library]]

Revision as of 17:29, 22 May 2009

Find connected clouds of objects in PyMOL
Colors all objects differently (Python script).
Find sequence or regular expression of amino acids in a protein.
Retrieves atom coordinates as Python objects.
Retrieves atom coordinates as Python array (list object).
Make named selections using regular expressions (protein sequence).
Prints a list of all residues in a selection (both Python and .pml).
Lists the color of all residues in a selection (both Python and .pml).
Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
Python method that returns true if a selection of a given name exists.
Moves two parts of one object into different directions.
Convert a multistate object into a group of single state objects.
Renumber residues such that the first residue is 0. Useful for alignments.
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