Category:ObjSel Scripts: Difference between revisions

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* [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL
* [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL
* [[Zero_residues]] -- Renumber residues such that the first residue is 0. Useful for alignments.
* [[Color Objects]] -- Colors all objects differently (Python script).
* [[FindSeq]] -- Find sequence or regular expression of amino acids in a protein.
* [[Get Coordinates I]] -- Retrieves atom coordinates as Python objects.
* [[Get Coordinates II]] -- Retrieves atom coordinates as Python array (list object).
* [[grepsel]] -- Make named selections using regular expressions (protein sequence).
* [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml).
* [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml).
* [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml).
* [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml).
* [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[Selection Exists]] -- Python method that returns true if a selection of a given name exists.
* [[Selection Exists]] -- Python method that returns true if a selection of a given name exists.
* [[Color Objects]] -- Colors all objects differently (Python script).
* [[Get Coordinates I]] -- Retrieves atom coordinates as Python objects.
* [[Get Coordinates II]] -- Retrieves atom coordinates as Python array (list object).
* [[grepsel]] -- Make named selections using regular expressions (protein sequence).
* [[Split Movement]] -- Moves two parts of one object into different directions.
* [[Split Movement]] -- Moves two parts of one object into different directions.
* [[Zero_residues]] -- Renumber residues such that the first residue is 0.  Useful for alignments.


[[Category:Script_Library]]
[[Category:Script_Library]]

Revision as of 08:46, 5 May 2009

  • ConnectedCloud -- Find connected clouds of objects in PyMOL
  • Color Objects -- Colors all objects differently (Python script).
  • FindSeq -- Find sequence or regular expression of amino acids in a protein.
  • Get Coordinates I -- Retrieves atom coordinates as Python objects.
  • Get Coordinates II -- Retrieves atom coordinates as Python array (list object).
  • grepsel -- Make named selections using regular expressions (protein sequence).
  • List Selection -- Prints a list of all residues in a selection (both Python and .pml).
  • List Colors -- Lists the color of all residues in a selection (both Python and .pml).
  • List Secondary Structures -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
  • Selection Exists -- Python method that returns true if a selection of a given name exists.
  • Split Movement -- Moves two parts of one object into different directions.
  • Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments.
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