Isosurface: Difference between revisions
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'''isosurface''' creates a new surface object from a map object. | '''isosurface''' creates a new surface object from a map object. | ||
== | == Usage == | ||
<source lang="python"> | <source lang="python"> | ||
isosurface name, map, level [,(selection) [,buffer [,state [,carve ]]]] | isosurface name, map, level [,(selection) [,buffer [,state [,carve ]]]] | ||
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* carve = a radius about each atom in the selection for which to include density. If "carve= not provided, then the whole brick is displayed. | * carve = a radius about each atom in the selection for which to include density. If "carve= not provided, then the whole brick is displayed. | ||
=== | == Examples == | ||
fetch 1oky, type=2fofc, async=0 | |||
isosurface 1okySurf, 1oky_2fofc | |||
With carving at 2 Angstrom around the molecular model: | |||
fetch 1oky, async=0 | |||
fetch 1oky, type=2fofc, async=0 | |||
isosurface 1okySurf, 1oky_2fofc, 1.0, (1oky), carve=2.0 | |||
== Notes == | |||
If the surface object already exists, then the new surface will be appended onto the object as a new state (unless you indicate a state). | If the surface object already exists, then the new surface will be appended onto the object as a new state (unless you indicate a state). | ||
== | == See Also == | ||
[[isodot]] | |||
* [[volume]] | |||
* [[isodot]] | |||
* [[isomesh]] | |||
* [[load]] | |||
* [[Dynamic_mesh]] | |||
[[Category:Commands|Isosurface]] | [[Category:Commands|Isosurface]] | ||
Revision as of 08:30, 14 October 2019
isosurface creates a new surface object from a map object.
Usage
isosurface name, map, level [,(selection) [,buffer [,state [,carve ]]]]
- name = the name for the new mesh isosurface object.
- map = the name of the map object to use for computing the mesh.
- level = the contour level.
- selection = an atom selection about which to display the mesh with an additional "buffer" (if provided).
- state = the state into which the object should be loaded (default=1) (set state=0 to append new surface as a new state)
- carve = a radius about each atom in the selection for which to include density. If "carve= not provided, then the whole brick is displayed.
Examples
fetch 1oky, type=2fofc, async=0 isosurface 1okySurf, 1oky_2fofc
With carving at 2 Angstrom around the molecular model:
fetch 1oky, async=0 fetch 1oky, type=2fofc, async=0 isosurface 1okySurf, 1oky_2fofc, 1.0, (1oky), carve=2.0
Notes
If the surface object already exists, then the new surface will be appended onto the object as a new state (unless you indicate a state).