Category:ObjSel Scripts: Difference between revisions

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* [[ConnectedCloud]] -- Find connected clouds of objects in PyMOL
* [[ConnectedCloud]] — Find connected clouds of objects in PyMOL
* [[Color Objects]] -- Colors all objects differently (Python script).
* [[Color Objects]] — Colors all objects differently (Python script).
* [[FindSeq]] -- Find sequence or regular expression of amino acids in a protein.
* [[FindSeq]] — Find sequence or regular expression of amino acids in a protein.
* [[Get Coordinates I]] -- Retrieves atom coordinates as Python objects.
* [[Get Coordinates I]] — Retrieves atom coordinates as Python objects.
* [[Get Coordinates II]] -- Retrieves atom coordinates as Python array (list object).
* [[Get Coordinates II]] — Retrieves atom coordinates as Python array (list object).
* [[grepsel]] -- Make named selections using regular expressions (protein sequence).
* [[grepsel]] — Make named selections using regular expressions (protein sequence).
* [[List Selection]] -- Prints a list of all residues in a selection (both Python and .pml).
* [[List Selection]] — Prints a list of all residues in a selection (both Python and .pml).
* [[List Colors]] -- Lists the color of all residues in a selection (both Python and .pml).
* [[List Colors]] — Lists the color of all residues in a selection (both Python and .pml).
* [[List Secondary Structures]] -- Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[List Secondary Structures]] — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
* [[Selection Exists]] -- Python method that returns true if a selection of a given name exists.
* [[Selection Exists]] — Python method that returns true if a selection of a given name exists.
* [[Split Movement]] -- Moves two parts of one object into different directions.
* [[Split Movement]] — Moves two parts of one object into different directions.
* [[Zero_residues]] -- Renumber residues such that the first residue is 0.  Useful for alignments.
* [[toGroup]] — Convert a multistate object into a group of single state objects.
* [[Zero_residues]] — Renumber residues such that the first residue is 0.  Useful for alignments.


[[Category:Script_Library]]
[[Category:Script_Library]]

Revision as of 17:27, 22 May 2009

  • ConnectedCloud — Find connected clouds of objects in PyMOL
  • Color Objects — Colors all objects differently (Python script).
  • FindSeq — Find sequence or regular expression of amino acids in a protein.
  • Get Coordinates I — Retrieves atom coordinates as Python objects.
  • Get Coordinates II — Retrieves atom coordinates as Python array (list object).
  • grepsel — Make named selections using regular expressions (protein sequence).
  • List Selection — Prints a list of all residues in a selection (both Python and .pml).
  • List Colors — Lists the color of all residues in a selection (both Python and .pml).
  • List Secondary Structures — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
  • Selection Exists — Python method that returns true if a selection of a given name exists.
  • Split Movement — Moves two parts of one object into different directions.
  • toGroup — Convert a multistate object into a group of single state objects.
  • Zero_residues — Renumber residues such that the first residue is 0. Useful for alignments.
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