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| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
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|- style="text-align:center; font-weight:normal; color: #000000; font-size: 120%; font-family: sans-serif;"
| To request a new account, email SBGrid at: accounts (@) sbgrid dot org
| If you want to contribute new content to this wiki, request an account by emailing accounts (@) sbgrid dot org from your '''institutional''' email address.
|- style="text-align:center; font-weight:bold; color: #000000; font-size: 120%; font-family: sans-serif;"
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" |Did you know...
|-
| Here’s a selection of pages:
* [[Commands]]
* [[Plugins]]
* [[Script Library]]
* [[Settings]]
 
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Latest revision as of 15:10, 27 April 2026

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
If you want to contribute new content to this wiki, request an account by emailing accounts (@) sbgrid dot org from your institutional email address.
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Setup PyMOL-open-source-windows-setup v3.1 has been released on January 20, 2025. More information under Windows Install.
New Plugin PySSA aims to combine PyMOL and ColabFold to enable the prediction and analysis of 3D protein structures for the scientific end-user. v1.0 has been released on July 10, 2024.
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Set Color

Set_Color defines a new color with color indices (0.0-1.0). Numbers between 0 an 255 can be used as well. (If at least one value is larger than 1, pymol will interpret all 3 values as between 0 and 255). If an existing color name is used, the old color will be overridden.

USAGE

set_color name, [ red-float, green-float, blue-float ]
set_color name = [ red-float, green-float, blue-float ]  #(DEPRECATED)

PYMOL API

cmd.set_color( string name, float-list rgb )

EXAMPLES

PyMOL>set_color red, [1,0.01,0.01]
 Color: "red" defined as [ 1.000, 0.010, 0.010 ].
PyMOL>set_color khaki, [195,176,145]
 Color: "khaki" defined as [ 0.765, 0.690, 0.569 ].

These will be added to the end of the list of Pymol's color indices that you can view the Get Color Indices command.

See Also
A Random PyMOL-generated Cover. See Covers.


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