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| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
| The community-run support site for the [http://pymol.org PyMOL] molecular viewer.
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| To request a new account, email SBGrid at: accounts (@) sbgrid dot org
| If you want to contribute new content to this wiki, request an account by emailing accounts (@) sbgrid dot org from your '''institutional''' email address.
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|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News & Updates
|-
! New Setup
| [https://github.com/kullik01/pymol-open-source-windows-setup/releases/tag/v3.1.0 PyMOL-open-source-windows-setup v3.1] has been released on January 20, 2025. More information under [[Windows Install]].
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! New Plugin
! New Plugin

Latest revision as of 15:10, 27 April 2026

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
If you want to contribute new content to this wiki, request an account by emailing accounts (@) sbgrid dot org from your institutional email address.
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Setup PyMOL-open-source-windows-setup v3.1 has been released on January 20, 2025. More information under Windows Install.
New Plugin PySSA aims to combine PyMOL and ColabFold to enable the prediction and analysis of 3D protein structures for the scientific end-user. v1.0 has been released on July 10, 2024.
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...
Showing Draw in Action

Draw creates an oversized and antialiased OpenGL image using the current window. It's like Ray but not ray traced. Also, as now with Ray the oversized images are scaled and shown in the viewer window. As Draw doesn't ray trace the shadows of the scene, it is far faster than ray.

Usage

draw [ width [, height [, antialias ]]]

Examples

draw 1600

will create an 1600-pixel wide image with an aspect ratio equal to that of the current screen.

draw 2000, 1500, 0

will create a 2000 by 1500 pixel image with antialiasing disabled

draw 600, 400, 2

will create a 600 by 500 pixel image with maximum (16X) antialiasing

Match ray tracing appearance

Since PyMOL 1.6, all "line"-type representations can be rendered as cylinders if shaders are available and all *_as_cylinders settings are set. Example:

set line_as_cylinders
set nonbonded_as_cylinders
set ribbon_as_cylinders
set mesh_as_cylinders
set dash_as_cylinders
 ..→
A Random PyMOL-generated Cover. See Covers.