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[[Image:Mesh_ex.png|thumb|Mesh Representation Example]]
=Overview=
PyMOL has a web-like, [[Mesh]] representation, as shown in the example images below.
 
Using the internal GUI, you may enable mesh by clicking the box with the letter '''S''' in it and selecting '''mesh'''.
 
=Syntax=
<source lang="python">
# show the selection, SEL, in mesh
show mesh, SEL
 
# using the 'as' keyword
as mesh, SEL
</source>
 
=Example=
<source lang="python">
select B, i. 40-110
show mesh, B
</source>
 
 
<gallery widths="175px" heights="175px">
Image:Mesh_ex.png|Mesh Representation Example
Image:Mesh_rm0.png|Mesh in ray_trace_mode,0
Image:Mesh_rm3.png|Mesh in ray_trace_mode,3; burnt and probably not what you're looking for.
Image:Mesh_w05.png|Mesh with width of 0.5, half of normal
Image:5ABP.png|Using mesh is a great way to show enclosed pockes.
</gallery>
 
== Settings ==
*[[cavity_cull]]
*[[mesh_carve_cutoff]]     
*[[mesh_cutoff]]           
*[[mesh_quality]]       
*[[mesh_carve_selection]] 
*[[mesh_grid_max]]         
*[[mesh_radius]]         
*[[mesh_carve_state]]     
*[[mesh_lighting]]       
*[[mesh_skip]]           
*[[mesh_clear_cutoff]]    
*[[mesh_mode]]             
*[[mesh_solvent]]       
*[[mesh_clear_selection]] 
*[[mesh_negative_color]]   
*[[mesh_type]]           
*[[mesh_clear_state]]     
*[[mesh_negative_visible]] 
*[[mesh_width]]
*[[mesh_color]]           
*[[mesh_normals]]       
 
== Notes ==
* Mesh doesn't ray trace well in ''set [ray_trace_mode]], 3''.  Try setting this to ''0'' if you mesh looks wonky.


== See Also ==
== See Also ==
[[Cmd isomesh]]
[[Isomesh]] [[Surface]]


[[Category:Representations|Mesh]]
[[Category:Representations|Mesh]]

Latest revision as of 03:53, 3 August 2010

Overview

PyMOL has a web-like, Mesh representation, as shown in the example images below.

Using the internal GUI, you may enable mesh by clicking the box with the letter S in it and selecting mesh.

Syntax

# show the selection, SEL, in mesh
show mesh, SEL

# using the 'as' keyword
as mesh, SEL

Example

select B, i. 40-110
show mesh, B


Settings

Notes

  • Mesh doesn't ray trace well in set [ray_trace_mode]], 3. Try setting this to 0 if you mesh looks wonky.

See Also

Isomesh Surface