Talk:TOPTOC: Difference between revisions

From PyMOLWiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 55: Line 55:
|}
|}
|-
|-
| align="left" |
| align="center" valign="top" |
{| style="align:left; color:#CC9752;padding: 10px; text-align:center; background: transparent;"
{| style="align:left; color:#CC9752;padding: 10px; text-align:center; background: transparent;"
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:center;" colspan=2 | Physico-chemical Modeling
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:center;" colspan=2 | Physico-chemical Modeling
Line 86: Line 86:
|}
|}
|-
|-
| align="center" |
| align="center" valign="top" |
{| style="align:center; color:#CC9752; padding: 10px; text-align:center; background: transparent;"
{| style="align:left; color:#CC9752; padding: 10px; text-align:center; background: transparent;"
! colspan="2" style="background:transparent; font-size: 150%; text-decoration:underline;" | Extending, Embedding & Scripting
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:center;" colspan=2 | Extending, Embedding & Scripting
|-
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
|-
|-
| style="background:transparent; color: #333; border:1px solid #f0f; text-align:center;"| Stuff
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
| style="background:transparent; color: #333; border:1px solid #f0f;  text-align:center;"| More Stuff
|}
|}
| align="center" valign="top" |
| align="center" valign="top" |
{| style="align:left; color:#CC9752; padding: 10px; background: transparent;"
{| style="align:center; color:#CC9752; padding: 10px; background: transparent;"
! colspan="2" style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" |  Third Party Applications
! colspan="2" style="background:transparent; font-size: 150%; text-decoration:underline; text-align:center; vertical-align:top;" |  Third Party Applications
|-
|-
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
# [[O]]
# [[O]]
# [[SURFNET]]
# [[SURFNET]]
|-
|
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
| style="background:transparent; color: #333; width:50%; text-align:left; vertical-align:top;"|
# [[Python_Integration|Python Integration]]
# [[Python_Integration|Python Integration]]

Revision as of 10:48, 15 September 2008

New Table

Here's the code for a new table for this page. This page is quite popular and needs to be cleaned up...alot.


Installation, Configuration & Learning
  1. Installation
    1. Linux
    2. MAC
    3. Windows
  2. Stereo 3D Display
    1. Linux XFree86 Configuration
  1. Using PyMol
    1. Launching
      1. Launching PyMOL
      2. Command Line Options
      3. Launching From a Script
    2. Mouse Controls
    3. Objects and Selections
      1. Working with Objects
      2. Working with Selections
      3. Selector Quick Reference
        1. Single-word Selectors
        2. Property Selectors
        3. Selection Algebra
        4. Selection Macros
Commands, Representations & Settings
  1. PyMOL Commands
  2. Settings (Documented)
    1. All
  1. Representations
    1. Lines
    2. Sticks
    3. Ball and Sticks
    4. Cartoon
    5. Surface
    6. Mesh
    7. Spheres
    8. Dots
  2. Coloring
    1. Color
Physico-chemical Modeling
  1. Biochemical Properties
    1. Displaying biochemical properties
    2. Surfaces and Voids
  1. Modeling and editing structures
    1. Editing Atoms
    2. Molecular sculpting
    3. Homology modeling
Images & Movies
  1. Image Manipulation
    1. Labels
    2. Photoshop/GIMP
    3. Stereo Figures
    4. Publication-quality images
    5. PovRay
  1. Making Movies
    1. Codecs
Extending, Embedding & Scripting
Third Party Applications
  1. O
  2. SURFNET
  1. Python Integration
  2. PyMol_Integration
    1. Nuccyl -- Nuccyl is a great PyMol extension
    2. CASTp -- Binding and Active site prediction
    3. CCTBX -- Computational Crystallography Toolbox
    4. ProMOL
    5. S2S
    6. Arbitrary_Graphics_Objects
Retrieved from "https://pymolwiki.org/index.php?title=Talk:TOPTOC&oldid=5418"