Enhanced version of this plugin is now available at CMPyMOL
The contact map visualizer plugin can link contact map images to the residues in PyMOL in a interactive way. Contact maps are pixel graphics where each protein residue corresponds to one line and one row of pixels. Thus for a 100 residue protein, such a image has 100x100 pixels. A common tool to generate such images is g_mdmat from the gromacs package.
Usage
contact_map_visualizer [ image_file [, selection ]]
Required Dependencies
- pygame
- Tkinter (optional and usually included with PyMOL)
- PIL (optional, for automatically converting XPM images)
Example for installing all dependencies on a Ubuntu like system:
<source lang="bash">
sudo apt-get ..→
