Difference between revisions of "Sticks"
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| Line 14: | Line 14: | ||
</gallery> | </gallery> | ||
| − | ==Sticks | + | ==Settings== |
| − | === Sticks Radius (Sticks Weight)=== | + | *[[stick_ball]] |
| + | *[[stick_nub]] | ||
| + | *[[stick_transparency]] | ||
| + | *[[stick_ball_ratio]] | ||
| + | *[[stick_overlap]] | ||
| + | *[[stick_valence_scale]] | ||
| + | *[[stick_color]] | ||
| + | *[[stick_quality]] | ||
| + | *[[stick_fixed_radius]] | ||
| + | *[[stick_radius]] | ||
| + | *[[set_bond]] | ||
| + | |||
| + | ===Example Settings=== | ||
| + | === Color Sticks=== | ||
| + | Use [[set_bond]] to set stick-bond settings, like color: | ||
| + | <source lang="python"> | ||
| + | set_bond 1foo and i. XYZ, color red | ||
| + | </source> | ||
| + | |||
| + | ==== Sticks Radius (Sticks Weight)==== | ||
To change the radius for sticks, enter the following: | To change the radius for sticks, enter the following: | ||
<source lang="python"> | <source lang="python"> | ||
| Line 27: | Line 46: | ||
*The default value is: ~0.3 | *The default value is: ~0.3 | ||
| − | ===Sticks Transparency=== | + | ====Sticks Transparency==== |
To enable transparency for sticks, enter the following: | To enable transparency for sticks, enter the following: | ||
<source lang="python"> | <source lang="python"> | ||
| Line 37: | Line 56: | ||
*'''0.0''' is 0% transparent -- so opaque | *'''0.0''' is 0% transparent -- so opaque | ||
| − | |||
<source lang="python"> | <source lang="python"> | ||
set stick_transparency, 0.45 | set stick_transparency, 0.45 | ||
| Line 43: | Line 61: | ||
[[Category:Representations|Sticks]] | [[Category:Representations|Sticks]] | ||
| + | [[Category:Sticks]] | ||
Latest revision as of 09:56, 2 July 2009
Overview
A simple PyMol representation where bonds are drawn as sticks. Use
# using the show command, for some SELECTION
show sticks, SELECTION
# using the as command
as sticks, SELECTION
where SELECTION is a valid selection or previously defined selection name.
Example Sticks Representation
Settings
- stick_ball
- stick_nub
- stick_transparency
- stick_ball_ratio
- stick_overlap
- stick_valence_scale
- stick_color
- stick_quality
- stick_fixed_radius
- stick_radius
- set_bond
Example Settings
Color Sticks
Use set_bond to set stick-bond settings, like color:
set_bond 1foo and i. XYZ, color red
Sticks Radius (Sticks Weight)
To change the radius for sticks, enter the following:
set stick_radius, VALUE
where
0.0<=VALUE<=1.0
- 1.0 is 100% or full radius
- 0.0 is 0% or invisible -- so use at least 0.1 or greater
- The default value is: ~0.3
Sticks Transparency
To enable transparency for sticks, enter the following:
set stick_transparency, VALUE
where 0.0<=VALUE<=1.0
- 1.0 is 100% transparent -- so invisible
- 0.0 is 0% transparent -- so opaque
set stick_transparency, 0.45