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News & Updates
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Removealt

Type Python Script
Download removealt.py
Author(s) Jason Vertrees
License Free
This code has been put under version control in the project Pymol-script-repo

removeAlt removes all atoms from obj that have alternate locations but aren't altloc keep.

Usage

removealt [ obj [, keep ]]

Example

import removealt

fetch 1hxb, async=0

select ligA, alt a
select ligB, alt b

count_atoms ligA    # 49 atoms
count_atoms ligB    # 49 atoms

removealt 1hxb, b

count_atoms ligA    # 0 atoms
count_atoms ligB    # 49 atoms

See Also

Handling Alternate Locations and alter

A Random PyMOL-generated Cover. See Covers.