Difference between revisions of "Main Page"
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! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins | ! style="font-weight: bold; font-size: 110%; text-decoration: underline; color: #000; padding: 12px; text-align: left;" | Scripts & Plugins | ||
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− | | style="padding: 3px 5px 10px 15px;"| ♦ [[ | + | | style="padding: 3px 5px 10px 15px;"| ♦ [[GetNamesInSel]] — find the names of all objects in a selection. |
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− | | style="padding: 3px 5px 10px 15px;"| ♦ [[ | + | | style="padding: 3px 5px 10px 15px;"| ♦ [[CalcArea]] — find the area of any given object/selection; |
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− | | style="padding: 3px 5px 10px 15px;"| ♦ [[ | + | | style="padding: 3px 5px 10px 15px;"| ♦ [[ConnectedCloud]] — find connected clouds of objects in PyMOL. |
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+ | | style="padding: 3px 5px 10px 15px;"| ♦ [[MakeVinaCommand]] — Use PyMOL to create a valid command line for the new [http://vina.scripps.edu Vina] docking software. | ||
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+ | | style="padding: 3px 5px 10px 15px;"| ♦ [[DrawMinBoundingBox]] — Draw the minimum bounding box around your selection. | ||
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| style="padding: 3px 5px 10px 15px;"| ♦ Locate loaded PyMOL objects that are nearby some other object with [[FindObjectsNearby]]. | | style="padding: 3px 5px 10px 15px;"| ♦ Locate loaded PyMOL objects that are nearby some other object with [[FindObjectsNearby]]. | ||
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| style="padding: 3px 5px 10px 15px;"| ♦ Ever wanted to load all the PDBs in a directory within PyMOL? Now you can load all files in a dir with [[LoadDir]]. | | style="padding: 3px 5px 10px 15px;"| ♦ Ever wanted to load all the PDBs in a directory within PyMOL? Now you can load all files in a dir with [[LoadDir]]. | ||
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− | | style="padding: 3px 5px 10px 15px;"| ♦ [[PDB Web Services Script]] | + | | style="padding: 3px 5px 10px 15px;"| ♦ [[PDB Web Services Script]] — Example using PyMOL and the PDB Web Services. |
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− | | style="padding: 3px 5px 10px 15px;"| ♦ [[LigAlign]] | + | | style="padding: 3px 5px 10px 15px;"| ♦ [[LigAlign]] — Ligand-based active site alignment and comparison. |
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| style="padding: 3px 5px 10px 15px;"| ♦ Added a [[COM|simple script]] for finding the center or mass, or moving a selection to the origin. | | style="padding: 3px 5px 10px 15px;"| ♦ Added a [[COM|simple script]] for finding the center or mass, or moving a selection to the origin. |
Revision as of 09:55, 20 March 2009
We are the community-based support site for the popular molecular visualization program, PyMOL. |
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