Difference between revisions of "Gallery"

From PyMOLWiki
Jump to: navigation, search
m (Link Grid Mode to the correct page)
Line 30: Line 30:
 
*[[Zoom]]
 
*[[Zoom]]
 
*[[Set]]
 
*[[Set]]
 +
*[[Property_Selectors |Short form Selectors]]
 
}}
 
}}
  

Revision as of 12:17, 11 June 2008

PyMOLWiki Gallery
Cool PyMOL-generated Images and their Scripts.

Add Your Own



Grid Mode What To Type
Gm2.png
Description
This image shows Grid Mode in action.


See Also
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode



Cool Perspective What To Type
Fov60.png
Description
This image shows a perspective through Field_Of_View.


See Also
load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray



Representing a binding pocket What To Type
Pocket.png
Description
This image shows a nice way to show binding surfaces


See Also
load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp

set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1

show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig

set surface_color, white
set surface_type, 2  # mesh
unset ray_shadows