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News & Updates Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Official Release PyMOL v2.0 has been released on September 20, 2017. Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL Official Release PyMOL v1.8.6 has been released on March 9, 2017. Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... BiologicalUnit/Quat Note: PyMOL 1.8 can load biological units from mmCIF files with the assembly setting. Included in psico This command or function is available from psico, which is a PyMOL extension. Module (biomolecule) psico.xtal (biomolecule) This script does more or less the same as BiologicalUnit. It creates the quaternary structure (BIOMOLECULE 1 assembly) from the REMARK 350 header. This script is convenient to use because it searches automatically for the PDB file in the current directory, in fetch_path and (if available) in your local PDB mirror. Also available from psico, but the command is called biomolecule instead of quat. Example Usage fetch 3bw1, type=pdb quat 3bw1 as cartoon The Code <source lang="python"> (c) 2010-2011 Thomas Holder, MPI for Developmental Biology Module for reading REMARK records from PDB files and in particular generate quaterny structure from REMARK 350. import sys, os from pymol ..→

A Random PyMOL-generated Cover. See Covers.