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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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News & Updates
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.2 have all been released on August 4, 2014.
Official Release PyMOL, AxPyMOL, and JyMOL v1.7 have all been released today, January 14, 2014.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
New Plugin GROMACS_Plugin is a new plugin that ties together PyMOL and GROMACS.
New Software CMPyMOL is a software that interactively visualizes 2D contact maps of proteins in PyMOL.
New Script cgo_arrow draws an arrow between two picked atoms.
Tips & Tricks Instructions for generating movie PDFs using .mpg movies from PyMOL.
Older News See Older News.
Did you know...

Split object

split_object takes a multi-molecular object and converts it into a multi-state object. Similar to split_states but for molecules instead of states and the result of this is a multi-state object.

<source lang="python"> import pymol

def split_object(target_obj=None, source_obj=None, max_iter=500, quiet=1, _self=cmd):

   """

DESCRIPTION

   Splits a multi-molecular object into one multi-state object

ARGUMENTS

   target_obj
       (string) name of target object
       
   source_obj
       (string) name of source object
   
   max_iter
       (int) maximum number of object to process; set to 0 to unlimit
   
   """
   if source_object==None:
       print "Error: Please provide a source object."
       return
   # ensure the user gave us one object; save for prefix
   obj_list = _self.get_object_list(target_obj)
   if len(obj_list)>1:
       print " Error: Please provide only one object at a time."
       return
   if target_object==None:
       target_object = _self.get_unused_name(sou ..→
A Random PyMOL-generated Cover. See Covers.