User contributions for Jaredsampson

16:0116:01, 25 February 2014 diff hist +730‎ MAC Install ‎ →‎PyMOL in brew: Updated homebrew link. Expanded installation section. Added "brew tap homebrew/dupes", which enables Tcl/Tk installation.

12:3212:32, 19 February 2014 diff hist +383‎ Model Space and Camera Space ‎ Added links to other PW pages. Removed unnecessary line breaks. Updated some language for clarity. current
11:2911:29, 19 February 2014 diff hist +380‎ N Talk:Translate ‎ Questioning two statements in the Notes section current
11:1211:12, 19 February 2014 diff hist +4‎ m Translate ‎ →‎EXAMPLES: Added example numbers. Moved Example 1 description below its heading. current
11:0911:09, 19 February 2014 diff hist −94‎ Translate ‎ →‎ARGUMENTS: corrected list of arguments from 1.7.0.0 `help translate`

14:4914:49, 5 January 2014 diff hist +1,062‎ N Geometry export mode ‎ Added basic description, example, and syntax for geometry_export_mode setting. current
14:2614:26, 5 January 2014 diff hist +256‎ Settings ‎ added alphabetic index for easier browsing
14:1014:10, 5 January 2014 diff hist −241‎ Template:Columns-list ‎ Blanked the page current
14:0914:09, 5 January 2014 diff hist +241‎ N Template:Columns-list ‎ Created page with "<includeonly>{{div col | cols = {{{cols|{{{1|}}}}}} | colwidth = {{{colwidth|}}} | rules = {{{rules|}}} | small = {{{small|}}} | style = {{{style|}}} | content = {{{2|{{{1|..."

13:1913:19, 1 January 2014 diff hist +22‎ N Set view ‎ redirect to existing page current
13:1713:17, 1 January 2014 diff hist +26‎ N Count states ‎ redirect to existing page current
13:1513:15, 1 January 2014 diff hist +22‎ N Get view ‎ redirect to existing page current
13:1413:14, 1 January 2014 diff hist +18‎ m Gallery ‎ fix broken links to Get_View

09:5409:54, 21 November 2013 diff hist −3‎ m Save ‎ →‎SEE ALSO
09:5409:54, 21 November 2013 diff hist +162‎ Save ‎ →‎Details: updated list of auto-detected formats [from modules/pymol/exporting.py]; added default state = -1
09:4209:42, 21 November 2013 diff hist +10‎ Load ‎ →‎SEE ALSO
09:1909:19, 21 November 2013 diff hist +77‎ m Practical Pymol for Beginners ‎ →‎The Python MiniShell: corrected typo, added <code> tags to commands instead of bold font weight
09:0309:03, 21 November 2013 diff hist 0‎ m Practical Pymol for Beginners ‎ changed capitalization of PyMOL

12:4112:41, 6 November 2013 diff hist +37‎ Elbow angle ‎ →‎Basic usage: added link to COM
12:3212:32, 6 November 2013 diff hist +33‎ Average b ‎ →‎code: adjusted string outputs to use string formatting instead of concatenation; adjusted whitespace around operators

14:2414:24, 29 October 2013 diff hist +169‎ Get Names ‎ added "how to tell whether or not object is enabled" as posted by Jason on pymol-users

18:0918:09, 26 April 2013 diff hist +754‎ Covers ‎ added Structure Nov 2009 cover. Began to sort by year and suggested a standardized format: Image|Description [link ''Journal'', Volume, Issue, Date].
10:5610:56, 26 April 2013 diff hist +136‎ N File:20091111 Structure cover.jpg ‎ Cover of the 11 November 2009 issue of Structure. Artwork by Jared Sampson, Xiangpeng Kong lab, New York University School of Medicine. current

14:1414:14, 15 June 2012 diff hist +22‎ Elbow angle ‎ →‎Included Example: added user link
14:1314:13, 15 June 2012 diff hist −2‎ Elbow angle ‎ changed release license to BSD
14:1314:13, 15 June 2012 diff hist +62‎ Elbow angle ‎ →‎Included Example: converted to infobox again (read that the old template had been deprecated)
14:0514:05, 15 June 2012 diff hist −22‎ Elbow angle ‎ →‎Included Example: restored original infobox from PymolScriptRepoDownload template
14:0014:00, 15 June 2012 diff hist +2‎ Elbow angle ‎ →‎Included Example: moved infobox down to be in same place as included pml script source
13:5813:58, 15 June 2012 diff hist +19‎ Elbow angle ‎ →‎Examples: added infobox for example pml script
13:5513:55, 15 June 2012 diff hist −1,110‎ Elbow angle ‎ →‎Examples: added include tag to refer to example script
10:3710:37, 15 June 2012 diff hist +45‎ User:Jaredsampson ‎ updated profile. added list of scripts.

22:5322:53, 14 June 2012 diff hist +786‎ Elbow angle ‎ Added Implementation section
22:1322:13, 14 June 2012 diff hist 0‎ m Elbow angle ‎ →‎Syntax: capitalized PyMOL
22:1322:13, 14 June 2012 diff hist +171‎ Elbow angle ‎ →‎Syntax: added description of object argument
22:1022:10, 14 June 2012 diff hist 0‎ m Elbow angle ‎ →‎Examples: fixed capitalization of Abnum to match Dr. Martin's page
22:0922:09, 14 June 2012 diff hist +232‎ Elbow angle ‎ →‎Examples: changed order of image and script to make the page look nicer. clarified explanation of arguments and importance of correct numbering and chain ids.
16:3316:33, 14 June 2012 diff hist +448‎ Elbow angle ‎ added syntax section
16:2516:25, 14 June 2012 diff hist +1,404‎ Elbow angle ‎ →‎Examples: added contents of example script
16:2216:22, 14 June 2012 diff hist +443‎ Elbow angle ‎ →‎Examples: added more details to first example, and better explanation for Pymol-script-repo example

14:1714:17, 8 June 2012 diff hist +814‎ N Transformations ‎ Basic description of script added. Explained basic import and started a list of scripts using transformations.py. current
13:5413:54, 8 June 2012 diff hist −42‎ Elbow angle ‎ →‎Examples: Updated description of visualization, removed orient command from example.
13:5313:53, 8 June 2012 diff hist +27‎ Elbow angle ‎ →‎Examples: updated gallery heights and widths
13:5213:52, 8 June 2012 diff hist −3‎ Elbow angle ‎ →‎Examples: updated link to second image
13:4713:47, 8 June 2012 diff hist +171‎ File:Stanfield.png ‎No edit summary current
13:4513:45, 8 June 2012 diff hist +200‎ N File:Stanfield.png ‎ Example PDBs from Stanfield, et al., JMB 2006 as shown in Fig. 1 of that paper. elbow_angle.py was used to calculate the elbow angles and draw a representation of the vectors used in the calculation.

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