User contributions for Jaredsampson
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19 January 2023
- 14:0914:09, 19 January 2023 diff hist −11 Get Title →PYMOL API: change to get_title API (this was apparently copied from the set_title page) current
- 14:0814:08, 19 January 2023 diff hist 0 Get Title →USAGE: fix typo in command name
15 February 2022
- 16:4116:41, 15 February 2022 diff hist +2 m CGO Shapes No edit summary current
13 February 2022
- 21:5321:53, 13 February 2022 diff hist +482 N Cgo transparency Add more details to usage and arguments current
- 21:4621:46, 13 February 2022 diff hist +56 CGO Shapes Add See Also section
- 21:4121:41, 13 February 2022 diff hist +4 CGO Shapes →EXAMPLES: fix missing namespace for cgo.CONE
- 21:3421:34, 13 February 2022 diff hist +18 CGO Shapes Add Category:CGO
- 21:3321:33, 13 February 2022 diff hist +19 CGO Shapes Add category:CGO
- 21:3121:31, 13 February 2022 diff hist +569 CGO Shapes →EXAMPLES: add image for the above examples
- 21:2621:26, 13 February 2022 diff hist +53 N File:Cgo examples.jpg Assorted rendered CGO objects in PyMOL. current
- 21:2021:20, 13 February 2022 diff hist +946 CGO Shapes Add examples and CONE
- 21:0421:04, 13 February 2022 diff hist +1,340 N CGO Shapes Create page
- 20:5020:50, 13 February 2022 diff hist +625 N Load CGO Create page current
25 March 2020
- 14:4614:46, 25 March 2020 diff hist +144 Pml →Basic usage: clarify about relative paths current
- 14:4514:45, 25 March 2020 diff hist +57 Pml →PyMOL Script: fix fixed-width formatting
- 14:4214:42, 25 March 2020 diff hist +14 Pml →Basic usage: fix fixed-width formatting
- 14:4014:40, 25 March 2020 diff hist +6 Pml →Python code: Italics
- 14:3914:39, 25 March 2020 diff hist +49 Pml →Python code: add syntax highlighting
- 14:3814:38, 25 March 2020 diff hist +21 N Collada Create redirect current Tag: New redirect
- 14:3414:34, 25 March 2020 diff hist +36 Pml →Handy commands to include in your scripts: add <code> tags
- 14:2914:29, 25 March 2020 diff hist +17 N PML create redirect current Tag: New redirect
- 14:2814:28, 25 March 2020 diff hist 0 m Pml Jaredsampson moved page PML to Pml without leaving a redirect: Consistent with other page names
- 14:2614:26, 25 March 2020 diff hist +1,889 Pml Add syntax and handy commands sections
- 11:4911:49, 25 March 2020 diff hist +60 Pml →PyMOL Script
- 11:4811:48, 25 March 2020 diff hist +439 N Pml Created page with basic description
- 11:3911:39, 25 March 2020 diff hist +8 Running Scripts →Python or Pymol?: Add link to PML page current
2 October 2019
- 12:3812:38, 2 October 2019 diff hist +23 Set Color Add link to missing set_object_color command page current
5 December 2018
- 23:0723:07, 5 December 2018 diff hist +36 File:4gms colors.png formatting for script current
- 23:0423:04, 5 December 2018 diff hist +1,015 N File:4gms colors.png Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha...
8 October 2018
- 12:1512:15, 8 October 2018 diff hist +184 Talk:MAC Install →Package managers: new section current
- 12:0512:05, 8 October 2018 diff hist +51 MAC Install →Pre-compiled: Make Homebrew the recommended package manager current
- 12:0112:01, 8 October 2018 diff hist −97 MAC Install →Pre-compiled: Update Homebrew info to reflect new location of PyMOL formula and no more need for flags in dependencies.
8 March 2018
- 12:1912:19, 8 March 2018 diff hist +16 Isomesh →USAGE: add units for "level" parameter
15 November 2017
- 14:2114:21, 15 November 2017 diff hist +253 Colorblindfriendly →Download the script and run locally: Add a "run from Github" example. current
26 October 2017
- 15:0815:08, 26 October 2017 diff hist +291 Colorblindfriendly →Usage: Add instructions for running as dowloaded script.
- 14:5014:50, 26 October 2017 diff hist −1 Colorblindfriendly →Usage: update code samples and use <code> instead of <tt> tags.
- 08:5108:51, 26 October 2017 diff hist −3 Colorblindfriendly →Requirements: update to reflect support for older PyMOLs
25 October 2017
- 23:4223:42, 25 October 2017 diff hist −2 m Colorblindfriendly →Usage: fix object name for consistency
- 23:4123:41, 25 October 2017 diff hist +1,281 Colorblindfriendly →Usage: Update usage for version 0.2; Add requirements section.
- 23:1723:17, 25 October 2017 diff hist +107 N File:Colorblindfriendly menu.png Screenshot of the color list menu added to the OpenGL GUI by the colorblindfriendly.py script in PyMOL 2.0. current
- 23:0423:04, 25 October 2017 diff hist −35 Colorblindfriendly →Colors: show 0-255 values instead.
- 21:2521:25, 25 October 2017 diff hist +116 Get Color Indices add reference to Get_color_index
- 21:2321:23, 25 October 2017 diff hist +141 Get color index Add See Also and Categories current
- 21:2121:21, 25 October 2017 diff hist +226 N Get color index Create page
28 July 2017
- 19:2619:26, 28 July 2017 diff hist +5 Selection Algebra →Selection Operator/Modifier Table: fix vertical line display for "or" operator
15 January 2017
- 23:1923:19, 15 January 2017 diff hist +47 PyMOLProbity →Description: add link to repository
14 January 2017
- 12:4812:48, 14 January 2017 diff hist +200 PyMOLProbity →Getting Started: Update GUI section.
- 12:4112:41, 14 January 2017 diff hist +5 PyMOLProbity Add screenshot.
- 12:3912:39, 14 January 2017 diff hist +247 N File:PyMOLProbity GUI.png Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. current
- 00:5200:52, 14 January 2017 diff hist +2,538 N PyMOLProbity Created page.
