User contributions for Speleo3
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29 August 2011
- 10:5110:51, 29 August 2011 diff hist +246 Selection Algebra pepseq
18 August 2011
- 10:5210:52, 18 August 2011 diff hist +498 PythonTerminal redundant script, functionality already in PyMOL current
- 10:3610:36, 18 August 2011 diff hist +38 m Get unused name No edit summary current
- 10:3310:33, 18 August 2011 diff hist +385 N Get legal name Created page with "'''get_legal_name''' is an API only function that clears any non-valid characters from a potential object name. ''New in PyMOL version 1.2'' == PyMOL API == <source lang="pyth..."
- 10:2610:26, 18 August 2011 diff hist +485 N Get unused name Created page with "'''get_unused_name''' is an API only function that returns a new object name. ''New in PyMOL version 1.2'' == PyMOL API == <source lang="python"> cmd.get_unused_name(string pr..."
- 10:0510:05, 18 August 2011 diff hist +964 N Get raw alignment Created page with "'''get_raw_alignment''' is an API only function that returns a list of lists of (object,index) tuples containing the raw per-atom alignment relationships. Alignment objects can b..."
15 August 2011
- 04:1004:10, 15 August 2011 diff hist −1,453 Center of mass catch get_unused_name error for backwards compatibility; Remove redundant previous implementation
- 03:5203:52, 15 August 2011 diff hist +25 Centroid use chempy instead of numpy
5 August 2011
- 02:2702:27, 5 August 2011 diff hist +121 Supercell headers, withmates=1 as default, tab-completion, see also
4 August 2011
- 07:1907:19, 4 August 2011 diff hist 0 Set Key make example working
- 02:4702:47, 4 August 2011 diff hist +50 Peptide Sequence mention fab and Builder
3 August 2011
- 11:5811:58, 3 August 2011 diff hist +1,655 N Fab Created page with "'''fab''' builds peptide entities from sequence. The sequence must be specified in one-letter code. Several fragments will be created if the sequence contains spaces (chain break..."
- 03:0603:06, 3 August 2011 diff hist +252 Align return value of cmd.align
2 August 2011
- 08:3508:35, 2 August 2011 diff hist +178 N Talk:Alter Created page with "The "Coloring a Viral Capsid by Distance from Core" example is very nice, but it has nothing to do with the "alter" command. --~~~~"
31 July 2011
- 14:0614:06, 31 July 2011 diff hist −67 Modeling and Editing Structures links
25 July 2011
- 02:5902:59, 25 July 2011 diff hist +1,253 User:Speleo3 save_settings
20 July 2011
- 06:1506:15, 20 July 2011 diff hist +39 m User:Speleo3 Scripts written by me
5 July 2011
- 07:3407:34, 5 July 2011 diff hist +38 Aa codes LEU missing in aa3
- 06:3106:31, 5 July 2011 diff hist +137 Find pairs state-index current
- 06:0906:09, 5 July 2011 diff hist +297 Iterate State ARGUMENTS
1 July 2011
- 05:4905:49, 1 July 2011 diff hist +1,326 N Talk:Plugindirectory Examples
- 04:4904:49, 1 July 2011 diff hist +150 AAindex see also
- 03:3903:39, 1 July 2011 diff hist +42 PyDet link fix current
- 03:2503:25, 1 July 2011 diff hist +81 Main Page PluginDirectory
30 June 2011
- 13:2913:29, 30 June 2011 diff hist +597 Talk:ProMOL Make this work in a personal plugin directory current
- 10:4010:40, 30 June 2011 diff hist +20 PluginArchitecture PluginDirectory
- 10:3510:35, 30 June 2011 diff hist +2,219 N Plugindirectory Created page with "This page describes how to set up a personal plugin directory. It supports single python files as well as directories which contain a __init__.py file. 1) Create a directory '''..."
28 June 2011
- 12:2912:29, 28 June 2011 diff hist +392 Dss arguments current
24 June 2011
- 04:0304:03, 24 June 2011 diff hist −1,203 m User:Speleo3 moved polarpairs script to its own page
- 04:0104:01, 24 June 2011 diff hist +21 m Polarpairs plugins category
- 04:0004:00, 24 June 2011 diff hist +1,823 N Polarpairs Created page with "Find polar pairs with the cmd.find_pairs function and return them as a list of atom pairs. It finds (more or less) the same contacts like [[distance|cmd.distance(m..."
- 03:3403:34, 24 June 2011 diff hist +6 m Find pairs PyMOL API
- 03:3303:33, 24 June 2011 diff hist +1,023 N Find pairs Created page with "'''find_pairs''' is an API only function which returns a list of atom pairs. Atoms are represented as (model,index) tuples. Can be restricted to hydrogen-bonding-like contacts. ..."
14 June 2011
- 10:3410:34, 14 June 2011 diff hist +413 User:Speleo3 build pymol
- 10:1610:16, 14 June 2011 diff hist +30 User:Speleo3 →Scripts written by me
9 June 2011
- 11:0011:00, 9 June 2011 diff hist +24 m User:Speleo3 No edit summary
- 10:5110:51, 9 June 2011 diff hist +1,179 User:Speleo3 polarpairs script
- 02:3102:31, 9 June 2011 diff hist +426 CalcArea No edit summary current
8 June 2011
- 11:3011:30, 8 June 2011 diff hist +158 Talk:FocalBlur No edit summary
- 11:1011:10, 8 June 2011 diff hist +115 FocalBlur angles as Fermat's spiral instead of random
7 June 2011
- 08:3608:36, 7 June 2011 diff hist +49 Pml2py strip of comment
6 June 2011
- 10:1810:18, 6 June 2011 diff hist +60 Main Page new script: show bumps
- 10:1510:15, 6 June 2011 diff hist +908 N Show bumps Created page with "This is a script to visualize VDW clashes, just like the mutagenesis wizard does. Posted on [http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg09190.html pymo..."
29 May 2011
- 10:3510:35, 29 May 2011 diff hist +46 Simple Scripting doc template current
- 10:2910:29, 29 May 2011 diff hist −6,251 Script Tutorial remove duplicated content current
25 May 2011
- 05:5405:54, 25 May 2011 diff hist +628 Pml2py aliases, multiple commands in one line
24 May 2011
- 08:4008:40, 24 May 2011 diff hist +489 Pseudoatom ARGUMENTS current
20 May 2011
- 09:2909:29, 20 May 2011 diff hist +457 Pml2py use pymol.parsing module
27 April 2011
- 10:2710:27, 27 April 2011 diff hist +462 User:Speleo3 python terminal
21 April 2011
- 02:0602:06, 21 April 2011 diff hist −49 Removealt obj=all, comma