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- 12:35, 19 April 2011 diff hist +252 Nm Hide underscore names Created page with "PyMOL uses names prefixed with "_" (underscore) as special internal objects and selections. Setting "hide_underscore_names" in PyMOL will hide these objects or selections from t..." current
- 10:26, 19 April 2011 diff hist +1,371 N SelectClipped Created page with "This script selects those atoms that are == The Code == <source lang="python"> from pymol import cmd def clipped_by(at,v): x,y,z = at.coord nz = v[2]*(x-v[12])+v[5]*(y-v[1..."
- 14:23, 18 April 2011 diff hist -5 m Fetching scripts
- 15:15, 13 April 2011 diff hist -2 Volume
- 15:14, 13 April 2011 diff hist -377 Volume
- 15:13, 13 April 2011 diff hist +569 Volume →Examples
- 12:50, 13 April 2011 diff hist +245 N Button mode name Created page with "Button_mode_name is the textual description of the current state of the mouse mode matrix. Current options are: * 3-Button Maestro * 3-Button Viewing * 3-Button Edi..." current
- 20:15, 12 April 2011 diff hist +154 N Bg rgb bottom Created page with "This value, when bg_gradient is set, provides the bottom color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_top" current
- 20:14, 12 April 2011 diff hist +154 N Bg rgb top Created page with "This value, when bg_gradient is set, provides the top color for the gradient. Category:Settings == See Also == Bg_gradient bg_rgb_bottom" current
- 16:00, 12 April 2011 diff hist -8 Connect mode
- 14:46, 12 April 2011 diff hist +56 Connect mode
- 12:59, 11 April 2011 diff hist +240 N Bg gradient Created page with "Enable background gradients in the viewer window. (Does not yet ray trace.) 350px|set bg_gradient = Usage = <source lang="python"> # enable set bg_grad..."
- 12:59, 11 April 2011 diff hist +19 N File:Bg grad.png background gradient current
- 12:56, 11 April 2011 diff hist +39 N File:Screen shot 2011-04-11 at 12.55.49 PM.png Example image with the bg_gradient set. current
- 02:13, 8 April 2011 diff hist +336 N Ray direct shade Created page with "This setting heavily hints the shading from the viewer's POV. For example, without this set: 300px and with this set, 300px = Usag..." current
- 02:12, 8 April 2011 diff hist +19 N File:Shade.png ray_direct_shade on current
- 02:11, 8 April 2011 diff hist +20 N File:No shade.png ray_direct_shade off current
- 02:09, 8 April 2011 diff hist +48 N Ray blend red Created page with "See Ray_blend_colors. Category:Settings" current
- 02:09, 8 April 2011 diff hist +48 N Ray blend green Created page with "See Ray_blend_colors. Category:Settings" current
- 02:08, 8 April 2011 diff hist +48 N Ray blend blue Created page with "See Ray_blend_colors. Category:Settings" current
- 02:07, 8 April 2011 diff hist +549 N Ray blend colors Created page with "When ray_blend_colors is set, it knocks out the RGB component of the ray_blend_red, ray_blend_green, ray_blend_blue. For example, without blending a rainbow pict..." current
- 02:04, 8 April 2011 diff hist +15 N File:Ray blend red.png red blended out current
- 02:03, 8 April 2011 diff hist +13 N File:Ray blend off.png ray blend off current
- 21:14, 1 April 2011 diff hist +324 Volume
- 21:09, 1 April 2011 diff hist +55 N Volume color Created page with "Coming soon. Category:Commands Category:Volume"
- 21:08, 1 April 2011 diff hist +57 N Volume Created page with "Coming soon. Category:Commands Category:Volume"
- 12:55, 1 April 2011 diff hist +190 Stereo 3D Display Options →LCD Displays (120 Hz)
- 00:55, 17 March 2011 diff hist +252 Main Page
- 02:48, 5 March 2011 diff hist +331 Gallery
- 02:47, 5 March 2011 diff hist +31 N File:Rnt.png Ray-normal transparency example current
- 02:45, 5 March 2011 diff hist +1,050 Gallery
- 23:35, 2 March 2011 diff hist +48 HighlightAlignedSS
- 23:34, 2 March 2011 diff hist +1,704 N HighlightAlignedSS Created page with "This script will align and color the paired secondary structures of the two proteins a similar rainbow color. <source lang="python"> import pymol def highlight_aligned_ss(obj1,..."
- 23:33, 2 March 2011 diff hist +50 N File:Highlight ss1.png example of common highlighted secondary structures current
- 15:46, 15 February 2011 diff hist +268 Covers
- 15:43, 15 February 2011 diff hist +32 N File:Salam.jpg mol. micro. Volume 79, Feb, 2011 current
- 14:57, 11 February 2011 diff hist +372 Category:Script Library
- 16:20, 8 February 2011 diff hist +111 Main Page
- 16:08, 8 February 2011 diff hist +156 Map set
- 16:06, 8 February 2011 diff hist +48 N File:Map set ex.png Example consensus volume of the aligned ligands. current
- 16:05, 8 February 2011 diff hist +4 Map set
- 16:04, 8 February 2011 diff hist +1,647 N Map set Created page with "Map_set provides a number of common operations on and between maps. For example, with Map_set you can add two maps together or create a consensus map from a series of ma..."
- 14:50, 7 February 2011 diff hist -103 Spec reflect current
- 11:29, 7 February 2011 diff hist +825 N Quick dist Created page with "'''quick_dist''' will quickly find and write out the pairwise distances between two selections in PyMOL. On my machine this will write about 80,000 distance measures/second. <..." current
- 10:41, 1 February 2011 diff hist +76 APBS →Tiger (10.4)
- 10:39, 1 February 2011 diff hist +28 N File:Apbs ex.png Side-by-side map comparisons current
- 18:20, 30 January 2011 diff hist -1 Roving delay current
- 18:19, 30 January 2011 diff hist -1 Mdo
- 14:03, 27 January 2011 diff hist +2,231 m Main Page Reverted edits by Yaketand (Talk) to last revision by Tlinnet
- 19:42, 4 January 2011 diff hist +180 N Talk:ColorByDisplacement Created page with 'This looks cool. It seems you forgot to post the code for the functions: :: * ColorByDisplacementCA :: * ColorByDisplacementAll ~~~~'