Scripts & Plugins
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♦ FindSeq — Find sequence or regular expression of amino acids in a protein.
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♦ Modevectors — creates arrow plots for normal mode analysis (NMA), NMR ensembles and other cases where you want to point out differences between similar objects.
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♦ Pucker — finds the sugar pucker information (phase, amplitude, pucker) for a given selection.
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♦ GetNamesInSel — find the names of all objects in a selection.
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♦ CalcArea — find the area of any given object/selection;
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♦ ConnectedCloud — find connected clouds of objects in PyMOL.
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♦ MakeVinaCommand — Use PyMOL to create a valid command line for the new Vina docking software.
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♦ DrawBoundingBox — Draw a bounding box around your selection.
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♦ Locate loaded PyMOL objects that are nearby some other object with FindObjectsNearby.
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♦ Ever wanted to load all the PDBs in a directory within PyMOL? Now you can load all files in a dir with LoadDir.
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♦ PDB Web Services Script — Example using PyMOL and the PDB Web Services.
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♦ LigAlign — Ligand-based active site alignment and comparison.
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♦ Added a simple script for finding the center or mass, or moving a selection to the origin.
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