Cavity cull

Overview

set cavity_cull allows the user to define how sensitive pymol it to detecting cavities within the interior of a molecule.
Smaller cavities are not detected as the cavity cull value is increased. The value may correspond in angstroms a dimension of the cavity approximately.

Syntax

set cavity_cull, <number>                          #default 2

Example

• 

  cavity_cull 0

• 

  cavity_cull 2 (default)

• 

  cavity_cull 20