Cavity cull

Overview

set cavity_cull allows the user to define how sensitive pymol it to detecting cavities within the interior of a molecule. Smaller cavities are not detected as the cavity cull value is increased. The value may correspond in angstroms a dimension of the cavity approximately.

Syntax

# default 2
set cavity_cull, <number>

Example

• 
  cavity_cull 0
• 
  cavity_cull 2 (default)
• 
  cavity_cull 20