News & Updates
New Plugin
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ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
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Official Release
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PyMOL v2.1 has been released on March 13, 2018.
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Selection keywords
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New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
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Plugin Update
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MOLE 2.5 is an updated version of channel analysis software in PyMOL
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New Script
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dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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New Plugin
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LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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Older News
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See Older News.
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Did you know...
Volume visualization of electron density for PDB 1oky
Volume panel for the 1oky volume example. It has the iso-levels on the x-axis and the opacity (1.0 - transparency) on the y-axis.
Volume creates a new volume object from a map object. The data (3D scalar fields) are shown as a true 3D object using coloring and transparencies defined by the user to illustrate the data values.
This technique supports single and multiple isosurfaces.
Usage
volume name, map [, ramp [, selection [, buffer [, state [, carve ]]]]]
Arguments
- name = the name for the new volume object.
- map = the name of the map object to use for computing the volume.
- ramp = str: named color ramp {default: }
- selection = an atom selection about which to display the mesh with an additional "buffer" (if provided).
- carve = a radius about each atom in the selection for which to include density. If "carve" is not provided, then the whole brick is displayed.
== ..→
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A Random PyMOL-generated Cover. See Covers.
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