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This page is a sub-category of scripts for Structural Biology Applications.
- Cealign -- Implementation of the CE Structure Alignment algorithm as a PyMOL plugin.
- Kabsch -- Kabsch alignment of two sets of vectors. (Part 2 of a protein alignment.)
- LigAlign -- Ligand-based active site alignment and comparison.
- WriteSS -- Writes secondary structural elements, for each residues, to a file.
- ss -- Simple command to summarise the Secondary Structure as a list of "start-end type" like sses.
- iterate_sses -- Slightly more complex version of "ss" that allows the user to pass in a function to act on the sse list.
- Helicity_check -- helicity_check show the evolution of O - N distances over an amino acid sequence
- Measure Distance -- Measures the distance between two atoms (Python script).
- Translate_And_Measure -- prints overlap if any of the atoms in molA or molB were within 4 Angstrom after translating by 1 along X
- motif -- Designed for easy display of backbone motifs (nests,
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 A Random PyMOL-generated Cover. See Covers.
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