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News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... B2transparency Type Python Module Download scripts/b2transparency.py Author(s) Thomas Holder License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo b2transparency can set transparency settings like transparency or sphere_transparency for each atom scaled by b-factor (or any other numeric atomic property). Usage b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]] Example # some dummy molecule with increasing b-factor along the chain fab AAAAAAAAAAAAA alter all, b=resv b2transparency all as sticks show surface set surface_color, gray See Also spectrum

A Random PyMOL-generated Cover. See Covers.