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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
Quick Links
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Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) GoogleSearch
News & Updates
Server updates The underlying servers upon which the PyMOLWiki runs were upgraded over the weekend. We are now fully functional. A deep thanks to BitGnome for donating time and hardware for the PyMOL project.
fetch_host setting Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
Fetch Fetch has been updated to also load electron density maps.
Schrodinger Buys PyMOL Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
User Movie One of our users has posted another interesting movie, images from which were created with PyMOL.
New setting surface_cavity_mode to change how PyMOL displays cavities.
Search fixed. Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
New Command Cache—stores information on structures, so we don't have to recompute them.
Warren News about Warren DeLano's passing may be read on Warren's memorial page.
Setting Fetch_Path—Sets the default path for the fetch command.
New Script SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
Did you know...

Seq view overlay

=== OVERVIEW ===

The seq_view_overaly setting controls whether or not the background of the sequence viewer is opaque or not, allowing access to the underlying molecules.


USAGE

# make the sequence viewer background transparent
set seq_view_overlay, 1

# make it opaque again
set seq_view_overlay, 0

SEE ALSO

Seq_view

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A Random PyMOL-generated Cover. See Covers.