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| Cool PyMOL-generated Images and their Scripts. Add Your Own |
| Grid Mode | What To Type | |||||
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fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode
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| Cool Perspective | What To Type | |||||
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load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray
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| Representing a binding pocket | What To Type | |||||
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load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp
set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1
show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig
set surface_color, white
set surface_type, 2 # mesh
unset ray_shadows
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| QuteMol Like | What To Type | |||||
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load $TUT/1hpv.pdb
set_color oxygen, [1.0,0.4,0.4]
set_color nitrogen, [0.5,0.5,1.0]
remove solvent
as spheres
util.cbaw
bg white
set light_count,10
set spec_count,1
set shininess, 10
set specular, 0.25
set ambient,0
set direct,0
set reflect,1.5
set ray_shadow_decay_factor, 0.1
set ray_shadow_deday_range, 2
unset depth_cue
# for added coolness
# set field_of_view, 60
ray
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