User contributions for Jaredsampson
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29 October 2013
- 15:2415:24, 29 October 2013 diff hist +169 Get Names added "how to tell whether or not object is enabled" as posted by Jason on pymol-users
10 October 2013
- 13:0813:08, 10 October 2013 diff hist 0 m Fuse fix typo
18 September 2013
- 00:5600:56, 18 September 2013 diff hist +1 m MAC Install →PyMOL Install from Source, Using Fink: fixed typo
2 August 2013
- 11:4611:46, 2 August 2013 diff hist +2 m Command Line Options fixed typos
26 April 2013
- 19:0919:09, 26 April 2013 diff hist +754 Covers added Structure Nov 2009 cover. Began to sort by year and suggested a standardized format: Image|Description [link ''Journal'', Volume, Issue, Date].
- 11:5611:56, 26 April 2013 diff hist +136 N File:20091111 Structure cover.jpg Cover of the 11 November 2009 issue of Structure. Artwork by Jared Sampson, Xiangpeng Kong lab, New York University School of Medicine. current
5 October 2012
- 17:0117:01, 5 October 2012 diff hist +23 Elbow angle →Syntax
6 July 2012
- 12:3512:35, 6 July 2012 diff hist +2 Git install scripts →Adding Pymol-script-repo to PyMOL search path: clarified date of rev 3997
15 June 2012
- 15:1415:14, 15 June 2012 diff hist +22 Elbow angle →Included Example: added user link
- 15:1315:13, 15 June 2012 diff hist −2 Elbow angle changed release license to BSD
- 15:1315:13, 15 June 2012 diff hist +62 Elbow angle →Included Example: converted to infobox again (read that the old template had been deprecated)
- 15:0515:05, 15 June 2012 diff hist −22 Elbow angle →Included Example: restored original infobox from PymolScriptRepoDownload template
- 15:0015:00, 15 June 2012 diff hist +2 Elbow angle →Included Example: moved infobox down to be in same place as included pml script source
- 14:5814:58, 15 June 2012 diff hist +19 Elbow angle →Examples: added infobox for example pml script
- 14:5514:55, 15 June 2012 diff hist −1,110 Elbow angle →Examples: added include tag to refer to example script
- 11:3711:37, 15 June 2012 diff hist +45 User:Jaredsampson updated profile. added list of scripts.
14 June 2012
- 23:5323:53, 14 June 2012 diff hist +786 Elbow angle Added Implementation section
- 23:1323:13, 14 June 2012 diff hist 0 m Elbow angle →Syntax: capitalized PyMOL
- 23:1323:13, 14 June 2012 diff hist +171 Elbow angle →Syntax: added description of object argument
- 23:1023:10, 14 June 2012 diff hist 0 m Elbow angle →Examples: fixed capitalization of Abnum to match Dr. Martin's page
- 23:0923:09, 14 June 2012 diff hist +232 Elbow angle →Examples: changed order of image and script to make the page look nicer. clarified explanation of arguments and importance of correct numbering and chain ids.
- 17:3317:33, 14 June 2012 diff hist +448 Elbow angle added syntax section
- 17:2517:25, 14 June 2012 diff hist +1,404 Elbow angle →Examples: added contents of example script
- 17:2217:22, 14 June 2012 diff hist +443 Elbow angle →Examples: added more details to first example, and better explanation for Pymol-script-repo example
8 June 2012
- 15:1715:17, 8 June 2012 diff hist +814 N Transformations Basic description of script added. Explained basic import and started a list of scripts using transformations.py. current
- 14:5414:54, 8 June 2012 diff hist −42 Elbow angle →Examples: Updated description of visualization, removed orient command from example.
- 14:5314:53, 8 June 2012 diff hist +27 Elbow angle →Examples: updated gallery heights and widths
- 14:5214:52, 8 June 2012 diff hist −3 Elbow angle →Examples: updated link to second image
- 14:4714:47, 8 June 2012 diff hist +171 File:Stanfield.png No edit summary current
- 14:4514:45, 8 June 2012 diff hist +200 N File:Stanfield.png Example PDBs from Stanfield, et al., JMB 2006 as shown in Fig. 1 of that paper. elbow_angle.py was used to calculate the elbow angles and draw a representation of the vectors used in the calculation.
- 14:4214:42, 8 June 2012 diff hist −31 Elbow angle →Examples: removed gallery dimensions
- 14:3714:37, 8 June 2012 diff hist +1 Elbow angle No edit summary
- 14:2914:29, 8 June 2012 diff hist +81 N File:Elbow angle 3ghe.png View of the elbow_angle vector representation for the Fab fragment from PDB 3ghe. current
- 14:2414:24, 8 June 2012 diff hist −203 Elbow angle removed reference to github example script
- 14:2314:23, 8 June 2012 diff hist +1,415 N Elbow angle Added the page for elbow_angle.py script in Pymol-script-repo
1 May 2012
- 10:4510:45, 1 May 2012 diff hist −2 m Iterate →Details: fixed typos and removed orphaned colons.
14 February 2012
- 14:5714:57, 14 February 2012 diff hist +291 Set name →User Comments/Examples: added comment comparing set_name to shell mv
26 January 2012
- 11:2711:27, 26 January 2012 diff hist +14 MAC Install →Mighty Mouse: changed title to include magic mouse
- 11:2611:26, 26 January 2012 diff hist +545 MAC Install →Mighty Mouse: added link to MagicPrefs for 3-button Magic Mouse functionality, and description of Emulate three button mouse setting for X11
5 December 2011
- 11:2911:29, 5 December 2011 diff hist +37 m Single-word Selectors →More selectors
- 11:2911:29, 5 December 2011 diff hist +104 Single-word Selectors →More selectors: added a couple more descriptions to the list
- 11:2611:26, 5 December 2011 diff hist +138 Single-word Selectors added list of selectors (from Selector.c in source), excluding deprecated forms
9 March 2011
- 14:2914:29, 9 March 2011 diff hist −1 m Category:Structural Biology Scripts fixed typo in word "dependent" current
2 February 2011
- 13:0713:07, 2 February 2011 diff hist +37 m Ideas →Low-Level Enhancement Ideas (Mostly C-oriented): +1 for highlighting salt bridges
9 December 2010
- 14:0214:02, 9 December 2010 diff hist +5 User:Jaredsampson No edit summary
- 14:0114:01, 9 December 2010 diff hist −369 User:Jaredsampson No edit summary
- 13:3613:36, 9 December 2010 diff hist +296 Stereo mode Added example stereo_mode settings, since none were listed before.
26 October 2010
- 15:0115:01, 26 October 2010 diff hist +143 N Talk:Align Asking a question
7 September 2010
- 13:3513:35, 7 September 2010 diff hist +197 Orient →EXAMPLES: added a second image and <code> tags current
- 13:2913:29, 7 September 2010 diff hist +61 N File:1hiw orient2.png Demonstration of orient command with 1hiw, two trimers shown. current
