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Revision as of 22:39, 6 November 2016

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Auto zoom

==Overview==

When set "on", this setting causes PyMOL to "auto_zoom" to any new object upon loading. This is helpful when one wishes to look at a new object immediately upon loading it into your PyMOL session; it can also be vexing in the situation where you have a carefully constructed view that might be "lost" if you do not anticipate that the program will change the view on loading an additional object. If you opt to use "auto_zoom on", it is also wise to get in the habit of frequent session saves and also use of "scenes" and the "get_view" utility, which will save one's current view orientation matrix to the (temporary) memory cache. The 'default' behavior (ON) can be overridden by placing the "set auto_zoom, off" statement into your '.pymolrc' file, located in your login directory (under all flavors of unix).

Syntax

set auto_zoom, on

set auto_zoom, off

A Random PyMOL-generated Cover. See Covers.