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News & Updates Official Release PyMOL v1.8.2 has been released on April 20, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... TMalign Type Python Module Download tmalign.py Author(s) Thomas Holder License BSD This code has been put under version control in the project Pymol-script-repo Included in psico This command or function is available from psico, which is a PyMOL extension. Module psico.fitting tmalign is a python module (or script) that provides wrappers to TMalign, TMscore and MMalign. The executables can be downloaded from http://zhanglab.ccmb.med.umich.edu/TM-align/ and should be saved to any directory in PATH. The module also provides the command alignwithanymethod which is useful to quickly test different alignment methods (with their respective default values). Installation All dependencies are available from Anaconda Cloud: conda install -c schrodinger pymol conda install -c schrodinger pymol-psico conda install -c speleo3 tmalign Usage tmalign mobile, target [, args [, exe [, ter [, transform [, object ]]]]] tmscore and mmalign usage is equivalent. alignwithanymethod mobile, target [, methods ] Examples <syntaxhighl ..→

A Random PyMOL-generated Cover. See Covers.