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Revision as of 17:36, 4 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Light

= Overview =

Lighting is important for high-quality shots. PyMOL supports of up to 10 virtual lights. You can turn the lights on/off and also position them where you want (behind the camera).

Light2..Light9 control where the other lights go.

Syntax

# set the light to some position.  The 'position'
# must be a vector specifying the XYZ location
# to put the light.
set light, position

# for example
set light, [ -0.55, -0.70, 0.15 ]

User Hint

:

One neat trick, for rendering a "sunset" on your protein is to turn off all the lights, then render the scene as you move the light across the scene. The shadows move across the protein based on the light position and it looks like the sun is setting.


The Code

Here's the code for ..→

A Random PyMOL-generated Cover. See Covers.