Main Page: Difference between revisions

Revision as of 17:36, 4 January 2016

Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com

News & Updates
New Plugin	LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release	PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship	Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release	PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin	PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin	Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin	MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce	PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News	See Older News.

Did you know...
Grid mode == Overview == grid_mode partitions the screen into a grid and displays each molecule in one grid location. Each molecule rotates, zooms, etc in that grid. A possibly very useful option for PyMOL. Each grid area is assigned a grid_slot number. This allows you to assign objects to certain grids; very helpful. This can be useful when comparing homologous structures and you want to view and rotate the aligned structures side by side. This is similar to a multiple split screen view of the proteins. Hint: When using grid_mode with many molecules, it's sometimes good to align their centers of mass. This puts them all squarely in the middle of their grid element. The alignto command from cealign can do this for you. Hint: If you don't want to align the molecules (it's not really necessary for grid_mode) you can just center them on some coordinate. See COM. Hint: For most uses, instead of using the above ways to calculating centering, you may be fine just executing the 'reset' command ..→

A Random PyMOL-generated Cover. See Covers.

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